Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00052 ATGGAGTTCCCTCAAGAAACTTGTTTCAACTCTAGAAATTGGACTATAATTATCATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCCGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAGTCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAAGAAATGTCTTGGGTTGGATCAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCTATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCAAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATTTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTTCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGGAGTTCTCCAAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCAAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 2190 41.51 MEFPQETCFNSRNWTIIIMTYLQEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDQKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIQNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 416897 424034 - ClCG01G000510.1 Cla01g00052 263641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00052 729 Gene3D Helix hairpin bin 425 490 - -
Cla01g00052 729 Gene3D - 114 423 - -
Cla01g00052 729 CDD CAP_ED 499 630 IPR000595 -
Cla01g00052 729 Pfam Cyclic nucleotide-binding domain 519 610 IPR000595 -
Cla01g00052 729 Pfam Ion transport protein 112 426 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla01g00052 729 ProSiteProfiles cAMP/cGMP binding motif profile. 499 583 IPR000595 -
Cla01g00052 729 SMART cnmp_10 499 630 IPR000595 -
Cla01g00052 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 24 726 - -
Cla01g00052 729 Coils Coil 651 671 - -
Cla01g00052 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 726 - -
Cla01g00052 729 SUPERFAMILY Voltage-gated potassium channels 103 421 - -
Cla01g00052 729 Gene3D Jelly Rolls 497 617 IPR014710 -
Cla01g00052 729 SUPERFAMILY cAMP-binding domain-like 428 621 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00052 Cla-Chr1:416897 Cla02g02070 Cla-Chr2:35777075 0 dispersed
Cla05g00102 Cla-Chr5:942131 Cla01g00052 Cla-Chr1:416897 4.47E-49 dispersed
Cla02g01429 Cla-Chr2:28817885 Cla01g00052 Cla-Chr1:416897 0 transposed
Cla03g00662 Cla-Chr3:7986662 Cla01g00052 Cla-Chr1:416897 1.78E-10 transposed
Cla05g01774 Cla-Chr5:29601163 Cla01g00052 Cla-Chr1:416897 2.62E-12 transposed
Cla07g01624 Cla-Chr7:33577644 Cla01g00052 Cla-Chr1:416897 1.39E-124 transposed
Cla10g01398 Cla-Chr10:29072186 Cla01g00052 Cla-Chr1:416897 0 transposed
Cla11g00434 Cla-Chr11:5006657 Cla01g00052 Cla-Chr1:416897 6.05E-130 transposed
Cla01g00052 Cla-Chr1:416897 Cla05g00100 Cla-Chr5:929943 4.18E-06 wgd
Cla01g00052 Cla-Chr1:416897 Cla05g00954 Cla-Chr5:9512577 2.82E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00052 K05391 - csv:101221781 1366.67