Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00059 ATGTTGAGGGTGTCATCATCTTTTGGAACATGGAAGCACAATCGTTCGAAAGCTTGCTTGGAACTATTCCCTACTCTATGTAAAGGTTTACATACTGAAAACTCCAATATTATTTCTACCAATATTTGTATAAGTCGTCATGTAAGAAATGGTCATCTTGATCTTGCTCGAACTCTGTTCAATGAAATGCCAGTAAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAATTAGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGGGATGCATTGCAATAATGTAAAATTAAATGAGACGACCTTTTCTACTTTGTTGAGTATTTGTGCACACTCAGGGTGTACACCTGAGGGAAAACAATTTCATTGTTTGGTCTTGAAATCTGGGTTTCAGATATTTGAGCTTGTGGGAAGTGCATTGTTGTATTTGTATGCAAACATCAATGACATTAGTGGAGCTAAGCAAGTCTTTGATGAATTGCATGATAAGAATGATTTATTATGGAGCTTGATGCTTGTGGGGTATGTTAAATGCAATTTGATGGATGATGCTTTTGATCTATTTACGAAAATTCCAACACGGGATGTGGTGGTGTGGACTACTTTGATATCAGGGTATGCAAGAAGTGAGCATAACTGCCAGAGGGCATTGGAATTATTCTGCTCCATGTGGATGAATAGTGAGGTTGAGCCTAACGAGTTCACTTTTGATTGTATTGTGAGAGCTTGTGGGAGAATGGGAGATTTGAGTCAGGGGAAGGTTATTCATGGGATTTTGACTAAATATGGATTCCACTTCGATCATTCAATTTGTAGTGCACTGATTTCATTTTACTCTCAGTGTGAAGCTATTGACAATGCCAAGGCAGTTTATGATAGTATGGAAAGACCGTGTCTAAATGCTTCAAATTCTCTTTTGGAGGGGCTAATATTATCAGGAAGAATTAATGATGCTGAAGAAATTTTTTGTAAGTTAAGAGAAAAAAGTCCAGTTTCATATAATTTGATGCTTAAAGGGTATGCAATGAGTGGTAGAATTGAAGAATCAAAGAGATTATTTGAAAGAATGACTCATAAAACTATCATTTCATCAAACACTATGATATCTGTGTATTCCAGGAATGGCGAAATTGATAAAGCTTTCAAATTATTTGAGTCGATGAAGAGTGAAGGAAATCCTGTGACATGGAACTCAATGATATCGGGCTATATTCAAAATCATCAGCATGGAGAAGCTTTGAAACTCTATCTAACCATGTGCAGAACATCCGTTGAACGCTCGAGATCAACATTCTCTGCTCTGTTTCAAGCATGCACATGCTTAGGATCTATTCAATTTGGTCAATCACTCCATGCGCATGCAATCAAGACGGCCTTTGACTCGAATGTTTATGTTGGAACATCACTCATAGATATGTACTCAAAATGTGGGAGCATCTCTGGTGCTCAAACTTCGTTTGCCAGTGTTTATTTCCCTAATGTGGCAGCTTTTACCGCTCTAATTAATGGATATGTGCATCATGGACTTGGGATTGAAGCATTCTCAGTCTTTGAGGAGATGTTAAAGCACAAAGTTCTGCCAAATGGAGCTACTCTTTTGGGAATTCTTTCTGCATGTAGTTGTGCTGGTATGGTAAATGAAGGAATGGCAGTTTTCCATTCAATGGAAAACTGTTATGGTGTGATTCCAACTTTAGAACACTATGCTTGTGTGGTGGATCTTCTTGGTCGGTCAGGACGTCTGTATGAAGCTAAAGAATTTATTAGAAGCATGCCAATTGAAGCTGATACAGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGATGCTTAGTTTGGACCCCAACGCAATATCTGCTTATGTTACTCTGTCTAATATATATGCTAAATTAGGGAAGTGGGTAGAGAAGATCAATGTGAGGAGGCAATTGAGGAGCTTAAAAGTGAAAAAGAATCGTGGTTGTAGCTGGATCGATGTAAATAATAAAATTCATGTTTTCTCTGTAGAAGATAGGTCCCATCCGAACTGTAATGCAATTTATGCAACTTTAGAGCATCTATTAGCAAATGTGAACTCTATAGCTCAACTTAACTGTGTTCCCAAATCTGTTCCGGAGGTTTCCTTTTCGCATTCAATATACTCCCTTTGA 2202 38.06 MLRVSSSFGTWKHNRSKACLELFPTLCKGLHTENSNIISTNICISRHVRNGHLDLARTLFNEMPVRSVVSWNIMISGYSKLGKYSEALNLASGMHCNNVKLNETTFSTLLSICAHSGCTPEGKQFHCLVLKSGFQIFELVGSALLYLYANINDISGAKQVFDELHDKNDLLWSLMLVGYVKCNLMDDAFDLFTKIPTRDVVVWTTLISGYARSEHNCQRALELFCSMWMNSEVEPNEFTFDCIVRACGRMGDLSQGKVIHGILTKYGFHFDHSICSALISFYSQCEAIDNAKAVYDSMERPCLNASNSLLEGLILSGRINDAEEIFCKLREKSPVSYNLMLKGYAMSGRIEESKRLFERMTHKTIISSNTMISVYSRNGEIDKAFKLFESMKSEGNPVTWNSMISGYIQNHQHGEALKLYLTMCRTSVERSRSTFSALFQACTCLGSIQFGQSLHAHAIKTAFDSNVYVGTSLIDMYSKCGSISGAQTSFASVYFPNVAAFTALINGYVHHGLGIEAFSVFEEMLKHKVLPNGATLLGILSACSCAGMVNEGMAVFHSMENCYGVIPTLEHYACVVDLLGRSGRLYEAKEFIRSMPIEADTVIWGALLNACWFWMDLELGESVAKKMLSLDPNAISAYVTLSNIYAKLGKWVEKINVRRQLRSLKVKKNRGCSWIDVNNKIHVFSVEDRSHPNCNAIYATLEHLLANVNSIAQLNCVPKSVPEVSFSHSIYSL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 491441 493642 + ClCG01G000575.1 Cla01g00059 263648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00059 733 PANTHER - 27 180 - -
Cla01g00059 733 PANTHER - 179 331 - -
Cla01g00059 733 PANTHER - 340 394 - -
Cla01g00059 733 PANTHER - 306 365 - -
Cla01g00059 733 PANTHER - 368 711 - -
Cla01g00059 733 Pfam E motif 616 676 IPR046848 -
Cla01g00059 733 PANTHER - 306 365 - -
Cla01g00059 733 PANTHER - 368 711 - -
Cla01g00059 733 PANTHER - 179 331 - -
Cla01g00059 733 PANTHER - 27 180 - -
Cla01g00059 733 PANTHER - 340 394 - -
Cla01g00059 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cla01g00059 733 Pfam PPR repeat family 67 114 IPR002885 -
Cla01g00059 733 Pfam PPR repeat family 198 247 IPR002885 -
Cla01g00059 733 Pfam PPR repeat family 496 543 IPR002885 -
Cla01g00059 733 Pfam PPR repeat family 396 442 IPR002885 -
Cla01g00059 733 Gene3D Tetratricopeptide repeat domain 10 125 IPR011990 GO:0005515
Cla01g00059 733 Gene3D Tetratricopeptide repeat domain 365 449 IPR011990 GO:0005515
Cla01g00059 733 Gene3D Tetratricopeptide repeat domain 126 253 IPR011990 GO:0005515
Cla01g00059 733 Gene3D Tetratricopeptide repeat domain 471 705 IPR011990 GO:0005515
Cla01g00059 733 Gene3D Tetratricopeptide repeat domain 254 364 IPR011990 GO:0005515
Cla01g00059 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cla01g00059 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 235 IPR002885 -
Cla01g00059 733 Pfam PPR repeat 367 395 IPR002885 -
Cla01g00059 733 Pfam PPR repeat 307 332 IPR002885 -
Cla01g00059 733 Pfam PPR repeat 40 66 IPR002885 -
Cla01g00059 733 Pfam PPR repeat 335 362 IPR002885 -
Cla01g00059 733 Pfam PPR repeat 172 197 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 40 67 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 369 395 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 335 361 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 500 532 IPR002885 -
Cla01g00059 733 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Cla01g00059 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Cla01g00059 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cla01g00059 733 SUPERFAMILY TPR-like 375 651 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00059 - - - cmax:111490947 1256.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00059 Cla-Chr1:491441 Cla01g01547 Cla-Chr1:30110676 2.78E-10 dispersed
Cla01g00059 Cla-Chr1:491441 Cla04g00612 Cla-Chr4:20304962 1.17E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00059 Cla_Chr01 FPKM 5.23123 7.192739 24.678402 21.759834 14.375407 12.714855 14.537632 10.724243 10.631386 11.807275