Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00067 ATGAGCTTCAAAAGGGACCTCAAGCTTGTCGTCTTCGTTTTCTTGGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCGGTCATGTCAGAGCCAATCCAAGACAAGGAAGCTTTGCTTAATTTTATCAACAAGATGGATCACTCACACTCACTCAATTGGAAGAAGAGCACTTCTTTATGCAAAGAGTGGAAGGGAGTTCAATGCAACAATGCTGGATCCCAAGTTGTAGCTTTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTTGGTCGACTATCAGGACTTGAAACTCTAAGCCTAGGATCGAATTACATATCAGGGCCTTTCCCTTCTGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACTTGGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGTGCATCCCTAGCTCAATTTCAAACACGACACATTTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTAAGATTCCAGACCTCCACCTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACCATCTCACAGGGAATGTCCCTCAGTCCCTTCAAAGATTTCCGAGTCGGGCATTCTTCGGTAACAACCTCATCCCTGGAAATGCCATTCCTCCAGTTCGTCCTGGACAATCGCTCAATGCTCAACCATCAAAGAAAAGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTGCTCAAACAGAGGAGTAAAAAACAAGGCATCATCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGGATCTGATACACAAAGCAACAACCTCAAGTTCTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCTGAGGTGCTTGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACTTTAGAAGATGGTAATGCTGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGCTTGGGAGCGTTGAACATGAAAATGTGTGTGGTTTAAGGGCTTATTATTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTTTACCAACATGGAAGTGTCTCAGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAATCTCCTCTAGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATTCACTCAGAAAACTGCGGCAAACTCCTTGTCCATGGAAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCGCAGACGCCGGCGTCGCTGCTCTGATGAACCTCATGGTCCCGCCAGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGACTCTCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGAGGCAACAGCGGAGGCGGCGGCGATCAGATTATCCACCTAGTGCGTTGGGTGAACGCGGTGGTCCGCGAGGAGTGGACGGCAGAGGTGTTTGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAGATTGCGCTATCTTGTGTAGGAAGGGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGGCGTAGGAAGCCTACCGCCGTCGCCGTCGCCGCCGCCGCCGTTGGAACGTGGAGCGGGGGATTTGGTTCAGATTCAGGTGAATGTGGCTGAGGGTGACGGTGACGGTGGAGCTCCGTCGAGATCGATTTGA 1965 48.5 MSFKRDLKLVVFVFLAVFWFAATFYPVMSEPIQDKEALLNFINKMDHSHSLNWKKSTSLCKEWKGVQCNNAGSQVVALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGCIPSSISNTTHLTTLNLANNSLSGKIPDLHLPNLQELDLSNNHLTGNVPQSLQRFPSRAFFGNNLIPGNAIPPVRPGQSLNAQPSKKSTTTIGEAAILGIIIGGSAMGLVIAVILMVMCCSNRGVKNKASSKLDKQDLFVKKRGSDTQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSVEHENVCGLRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLLVHGNIKASNVFLNSDGYGCVADAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNSGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPSPSPPPPLERGAGDLVQIQVNVAEGDGDGGAPSRSI 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 554407 558422 - ClCG01G000650.1 Cla01g00067 263656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00067 654 PRINTS Leucine-rich repeat signature 172 185 - -
Cla01g00067 654 PRINTS Leucine-rich repeat signature 191 204 - -
Cla01g00067 654 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Cla01g00067 654 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515
Cla01g00067 654 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515
Cla01g00067 654 SUPERFAMILY Protein kinase-like (PK-like) 333 621 IPR011009 -
Cla01g00067 654 MobiDBLite consensus disorder prediction 611 631 - -
Cla01g00067 654 Pfam Protein kinase domain 332 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00067 654 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Cla01g00067 654 ProSiteProfiles Protein kinase domain profile. 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00067 654 PANTHER LRR RECEPTOR-LIKE KINASE 20 610 - -
Cla01g00067 654 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Cla01g00067 654 PANTHER OS05G0588300 PROTEIN 20 610 - -
Cla01g00067 654 Gene3D Ribonuclease Inhibitor 144 229 IPR032675 -
Cla01g00067 654 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cla01g00067 654 Gene3D Ribonuclease Inhibitor 33 143 IPR032675 -
Cla01g00067 654 SUPERFAMILY L domain-like 40 215 - -
Cla01g00067 654 Gene3D Phosphorylase Kinase; domain 1 295 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00067 Cla-Chr1:554407 Cla01g00205 Cla-Chr1:2033852 0 dispersed
Cla01g00067 Cla-Chr1:554407 Cla05g00939 Cla-Chr5:9311942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80224 PF00069 Pkinase 1.30E-30 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00067 - - csv:101219980 1089.72