Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00072 ATGGCTGCCCACAAAATTATCACAACCCTTTCCATCATCTTCCTCCTAGCCTCCATATTCCGATCTTCCGACGCCGCCGGAATCACCATCTATTGGGGCCAAAATGGTAATGAAGGCTCTCTTGCCTCCACTTGCGCTACCGGAAACTACCACATCGTCAACATAGCATTTCTCTCCTCCTTCGGTAGCGGCCGAACTCCGGTCCTCAACCTTGCTGGCCATTGCAACCCTAATAACAATGGTTGCGCCTTCTTGAGCAACCAAATCAAATCTTGCCAAAGCCGAGGCATCAAAGTCCTCCTCTCCATCGGCGGCGGCGCGGGGATTATTTCAACGACTCAATTCCTACAAAGCATACAAGTTGGTGAGAAAACTTACATGCGTTCATCATCGTTACGAGCCTTTTCTGGTCTGGTCTCGCTTTTCCAGCTAACATGCATGAAAGTTCCCCACACTTGTGTTTCTGATGCCTAA 474 49.37 MAAHKIITTLSIIFLLASIFRSSDAAGITIYWGQNGNEGSLASTCATGNYHIVNIAFLSSFGSGRTPVLNLAGHCNPNNNGCAFLSNQIKSCQSRGIKVLLSIGGGAGIISTTQFLQSIQVGEKTYMRSSSLRAFSGLVSLFQLTCMKVPHTCVSDA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 595520 603142 + ClCG01G000710.1 Cla01g00072 263661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00072 157 Gene3D Glycosidases 27 135 - -
Cla01g00072 157 PANTHER ENDOCHITINASE 5 121 - -
Cla01g00072 157 SUPERFAMILY (Trans)glycosidases 25 110 IPR017853 -
Cla01g00072 157 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 157 IPR001223 GO:0005975
Cla01g00072 157 Pfam Glycosyl hydrolases family 18 28 112 IPR001223 GO:0005975
Cla01g00072 157 PANTHER ACIDIC ENDOCHITINASE 5 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00072 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] - csv:101219497 187.193
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00072 Cla05g00936 CCT
Cla01g00072 Cla05g00936 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00072 Cla-Chr1:595520 Cla05g00133 Cla-Chr5:1252911 4.21E-38 dispersed
Cla01g00065 Cla-Chr1:546313 Cla01g00072 Cla-Chr1:595520 2.48E-13 proximal
Cla01g00072 Cla-Chr1:595520 Cla05g00131 Cla-Chr5:1234430 1.05E-20 wgd
Cla01g00072 Cla-Chr1:595520 Cla05g00936 Cla-Chr5:9261180 3.16E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g840 . . . . . . . . Cmo16g00088 . . . . . Sed02g1729 . Cpe14g00068 Bhi01g01432 Tan01g0168 Cmetu06g2105 Lac11g0131 Hepe07g0103 Mch10g0105 . Cla01g00072 Cam01g0072 Cec01g0073 Cco01g0073 Clacu01g0073 Cmu01g0074 Cre09g2436 . Cone5ag0662 . Cone15ag0046 Lsi05g01172 Csa05g00082 Chy09g01409 Cme06g01060 . . . . . . . . . Cmo02g01118 . Cma16g00085 . Car16g00074 . . . . . . . . . . Cla05g00936 Cam05g1024 Cec05g1028 Cco05g1024 Clacu05g1013 Cmu05g0966 Cre05g1047 Lsi09g00052 . . Cme09g01953
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000249 3 4 6 5 2 6 3 6 6 7 3 6 2 6 6 4 6 8 2 6 6 5 4 7 7 7 4 5 6 8 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00072 Cla_Chr01 FPKM 11.17837 12.63259 12.312641 11.962193 12.598556 11.91245 14.286223 13.227328 13.347188 13.585084