Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00074 ATGGAGATAGACGGGCTATGTGTTATCTGCGCTGGTCTTGGAATCGTCGAAGAGGATGACTACGGCAATCGGATCGGTTACTCCAAAACCGAGTTCTGTTTAGATAATTTGAAGGATTTGTTAAGGTTCTTGAGGCGAGATGACCCGCAGACTCGCGATGTTTTTAAGCAAGTTTGTAAATGGAACGTTGTGGGTAAAGATCTGATACCCATTATTGAATACTGTCAAGATGATCGTAATGCAGTCTTAAATGCAGTGAAGATTTTGGTGTTCCTTACAATGCCTATTGAACCCACGTCTAGTGACATCGCACAACAGATCGAATATTTATGGGGTTTGAAGTCTTTAATCACATGCAGTAATGTTGTTGCCATAATTGTTTCACTTTTGGAGAGTCCACTGGAAAATCTGGATTGTGGAACATTCTCAGAAGATGACTGGAAATTGGCGCAGCTGGTTATAACACTCTTCCGAAATGTTTTGGCTATTCAAGAAATCTCATTGCAGCAAAAGGCTGATGGATCAGCTTGTCAGTTAATATTGCTGAGAGACAAATTTCTGGAGGTCTTATTCCGGGAGAATGTTATGGACATAATATTGGTGATGACACAACACATTGACGGTTCTTGCAGCCATCTCCGTCAAGACAAATTAGTCTTTCTGGAAATATTTTATTACATATTTATGGGCCAAGAGCCAGAGTTAATTGCAAAAGTACCTCAAAACTGCAGTGAGGTTAATGAAAATGTAGAAGCTGAAGTGGTATCTTCTGTCAATAGTCTGAAGTCTATGATGGAGGAAGATAGAAGAAAGTTTACTAGATTACACAATATCAACCGCCATTCTCAGTTTAGTGGAACTTTTACTCGGCATACCTTGGATGGTTCAAAGTTAGTACTCAAAGGAAAACCATCTTTGACTTCTTGTACCAGCCTTAGACCACCTAAAGTTTGTAGAGGTCCAGTTAAAAAAATTGCATGGGACCATGGACCATTAACTTCGAAAAACAGCAAACTTCTGCAGTTACTTCATGATTTTATCAACCAGTTTCTTTCAGGCGGCTACAATGCTCTGATGCAGTTGGTGCATGAAGATATTGAAAAGGAACATCATTCCATCCAGAACAACGATGTGGTTGTATTTTTTCAGGTCGCACAGTTTGCTATTTCTTTTCAGTATCACAAGTTCTCAACTTCAAAGATAATTGAATCTGACACTGGTGAGGCTCAAACGGAACATGTTGATTCCACATTTTTCCAAGGCAACATGTGCGGTCCAATAGCAGCAACAATGAACGAGGCAATGTTTCAGCTAGTTGTTACAAAATGGCGTTATGCATTTGAAGGCTTAAAGGAAACTAATGACTTTAAGTTTCTTTCTGCAGCTGGCTCTCTGATGAAAAATATGATTTGCATGCTAGATTTGGTGCTAAAATTATTGCCAGAAGATTCAAAGGAGCCTCAAACAGCTCGTATTCTACTTTACAAATTATTTTATGATCAGACAGATCAAGGGATGACTCAATTCCTCTTAAATTTGCTTAAGTCATTCAACACTCACAAACAACCCAGAAGTGATCTTGCAGATTTAGTTGAGATGATCTACAAAGTCATACAGCTTATGGAGAACCTCCAAGCACGTGGAACACTTCGGGTTTCCAAAAAATCAAGGAGGGGAAGAAAGGCAAAGGCAGCAAATAATGAGGGCAACAAACAGTCAGAAGATCAGGGAGCTGAGAATAAGATGGCCATAACCCATAATGAACAATCAACAGATGTCGATGTTGGTGAAAATGGTAACTTGAAAATGAGTGCTGATGGTAAAGAAGAGATTTCTATTACTGCTAAGGCCGATGAACCTGAAATGCTAGACTTAAACACGGGAACTTTTGAAGGCAGTCTATCACAGAGAGAGGACAAAAAATTGAATGATGGTTATAGCACAGCCGACTCTTCTAGTGATGAACAGCAAAATAGAATTGTGGAGGTTGATCTTAAAGTATCAAGTCTAGTATCTACTTTTGCCAACAACAACATTATTCAGAAAATATGCTGGTTGCTTAAGTTTTACAAGAGCAATGCTACTAGTACAAACCATTACATAATATGCATTTTACGGAGGATCACTGAGGATTTGGAGCTTTCTCCAATGCTGTACCAGTTATCTGTCCTTCCCACATTTTATGATATTCTATCTGAACAGAAGTCAAGTCCATGCAAGGAATATGCTACTATAGTTGATTTCCTGACAAGTCTGGTGAGAAAGATGCTAAGGAAGATAAAGAATCAGCCACTCCTTTTTGTTGAAATTCTGTTTTGGAAGACCCGGAAAGAATGCCATTACATTGACGCTGAGTACTTAGTGCATGAGCTTGGCTGTTGGAAGAAAGAAAGTAGGGAGGGAAATTTTACTGATGGTGATGAAAATGGCTCGTTGATGGGCAAGCATTGGACTCCCAGAAGCATAGCAGATGCACTTGGTGAAGATGAAGCTGATGTTGTGATCACCACTAACGAGTTTGGATTTCATACTGAAGCAAAGTCTGACAAAGTCACGGGAGGCCTTGAGTCTACCACCTTGGATGATGAGATAGACGGGATAAAACACAATGAAAATGAGCTGTCTATGGATGATAAATCCAAAAGGCTTCCTAAAAGAAAGAGACTTGTTCTTGATGCTGAACTGGAGACTAAAATTAAAGATCTTTTTGAGAAATTCAAGGAGGACAGGAACTGTAGCAAACTTATCGCGGAGAATCTTGATAATGACGTCAAAGTTTCGCCTGCCCAGGTTTCCAATAAGCTTAGACAGATGGGTTTGAAAGTTTCTCAAAGAAAGAAGAGGCAGTATGCTGATGAAGCCTCTTCTGCTGAAAATCTTGAAGGCGAAAGCAATGTGGAAGAAAGGAATAGTCCACTTAACTCAAATGTTTTTGGGAAAAGTTCATTGAATCAACCGTCGCTCACTCGAAAAAGAGTTCTTGCTTTTGATAAAGAACACGAAGAGAAGATTAGAGCTTTATATGAGCAGTTTAAGGACCATAAGAGATGTAGTTCTATGATTGCAAATGCGCTGGATGCTGATAACAAATTCACTCCTGCCCAAGTTTCCCGAAAGCTCAAGCAATTGGGTTTGTATATTTCTCGTAAGAGAAGGTCGAGTGATGGGGATCACAATGATTCTGTTATTGATAAGGAATCTGAAATTGATGATGAAACATTGCTCTCATTAATAAATAGGAAAAAAGGGAAGCATCTTCAAAAGTCAACTGAAACGTCCAGTTCCATCTCAACACAGAGCATATTAATTGATGAGGAATCTGAAGATGTAGCTGTTGGAAGGTCCATGCAAATGGAGGATAGCAACCTAGCCAGTAGCTTGGAGCCTATGGAGGTTGGTAAAGCGCCTTCAGATGATGTTGACTTGAATGACTTTACGGAAAGTCAAGGTAAGAATGCTGAAGCTGGTGTCAGTATGGATGATTTGATGCAAAAGGCCATGGCAGATGAGTTTGCAGATTCAGACAATGAAGTGGCCCCCAGTGTGTATCGTGCAAGTGCCACGACTAGAAGAAAGTTTAGGATTGTTGATCTTGAGGATGAAGAATGA 3609 39.73 MEIDGLCVICAGLGIVEEDDYGNRIGYSKTEFCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNVVGKDLIPIIEYCQDDRNAVLNAVKILVFLTMPIEPTSSDIAQQIEYLWGLKSLITCSNVVAIIVSLLESPLENLDCGTFSEDDWKLAQLVITLFRNVLAIQEISLQQKADGSACQLILLRDKFLEVLFRENVMDIILVMTQHIDGSCSHLRQDKLVFLEIFYYIFMGQEPELIAKVPQNCSEVNENVEAEVVSSVNSLKSMMEEDRRKFTRLHNINRHSQFSGTFTRHTLDGSKLVLKGKPSLTSCTSLRPPKVCRGPVKKIAWDHGPLTSKNSKLLQLLHDFINQFLSGGYNALMQLVHEDIEKEHHSIQNNDVVVFFQVAQFAISFQYHKFSTSKIIESDTGEAQTEHVDSTFFQGNMCGPIAATMNEAMFQLVVTKWRYAFEGLKETNDFKFLSAAGSLMKNMICMLDLVLKLLPEDSKEPQTARILLYKLFYDQTDQGMTQFLLNLLKSFNTHKQPRSDLADLVEMIYKVIQLMENLQARGTLRVSKKSRRGRKAKAANNEGNKQSEDQGAENKMAITHNEQSTDVDVGENGNLKMSADGKEEISITAKADEPEMLDLNTGTFEGSLSQREDKKLNDGYSTADSSSDEQQNRIVEVDLKVSSLVSTFANNNIIQKICWLLKFYKSNATSTNHYIICILRRITEDLELSPMLYQLSVLPTFYDILSEQKSSPCKEYATIVDFLTSLVRKMLRKIKNQPLLFVEILFWKTRKECHYIDAEYLVHELGCWKKESREGNFTDGDENGSLMGKHWTPRSIADALGEDEADVVITTNEFGFHTEAKSDKVTGGLESTTLDDEIDGIKHNENELSMDDKSKRLPKRKRLVLDAELETKIKDLFEKFKEDRNCSKLIAENLDNDVKVSPAQVSNKLRQMGLKVSQRKKRQYADEASSAENLEGESNVEERNSPLNSNVFGKSSLNQPSLTRKRVLAFDKEHEEKIRALYEQFKDHKRCSSMIANALDADNKFTPAQVSRKLKQLGLYISRKRRSSDGDHNDSVIDKESEIDDETLLSLINRKKGKHLQKSTETSSSISTQSILIDEESEDVAVGRSMQMEDSNLASSLEPMEVGKAPSDDVDLNDFTESQGKNAEAGVSMDDLMQKAMADEFADSDNEVAPSVYRASATTRRKFRIVDLEDEE 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 610062 619703 + ClCG01G000730.1 Cla01g00074 263663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00074 1202 MobiDBLite consensus disorder prediction 958 982 - -
Cla01g00074 1202 Pfam Timeless protein 27 289 IPR006906 -
Cla01g00074 1202 MobiDBLite consensus disorder prediction 939 982 - -
Cla01g00074 1202 MobiDBLite consensus disorder prediction 550 607 - -
Cla01g00074 1202 MobiDBLite consensus disorder prediction 569 597 - -
Cla01g00074 1202 MobiDBLite consensus disorder prediction 634 655 - -
Cla01g00074 1202 PANTHER PROTEIN TIMELESS HOMOLOG 3 1148 - -
Cla01g00074 1202 PANTHER TIMEOUT/TIMELESS-2 3 1148 IPR044998 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00074 K03155 TIMELESS; timeless - csv:101218315 2094.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g830 . Blo15g00103 . . . Bpe07g01002 . . . . . . . . . . . . . . . . . . Cla01g00074 Cam01g0074 . Cco01g0075 Clacu01g0075 Cmu01g0076 Cre09g2433 . . . . . Csa05g00086 . . . . Bda06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00056 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00074 Cla_Chr01 FPKM 1.637856 1.668436 0.185321 0.087678 0.698103 0.303188 0.468054 0.0 0.0 0.0