Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00082 ATGGAACAGAAGCACATTTTTCTATCTGCTTTGGGTGTTGGGGTTGGAGTTGGGGTAGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAGATTACAGGGCAAAAGATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGCAAAAACAGCAATGTAACTTTTGATGAGTTTCCTTATTATCTAAGCGAAAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATTTCCAAGCACACCAGAAATCTTTCACCAGCAAGTCGGGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCTCTGGCGCATCACTTTGAGTCAAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTGACATTTGAGCGAATGTCTAGTGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGGGGAAACCTAAGAAGGCAAAGCAGTACTACTGACATTCAATCGAGATGCACCGATGGCTCGTCTAATCTTCCAAAACTTCGGAGAAATGCTTCCGCTGCATCTGATATCAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCTTCTGCCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCTTGGTGTCGGTATCCGAAACTAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACAAAGGATGTACAATCTGTTCAATAGATTTCTAAACAAGCTCTCGGGATCAGTTTTAGTACTTGGTTCTCGAATGGTAGATGTGGAAAATGATTGTGGAGATGTTGACGACAGACTGACCAATTTATTCCGGTATAGTGTTGAAGTTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATCACTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACCATGGTTCTCAGTAATTATATTGAAGAAATTGTCGTGTCAGCAATATCCTATCATCTGATGAACAACAGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCTAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACCCTAAAGTTAGAGACGAATGCAGAATCATCGAAGGAACCCCAAAGGGACGAAGCTGTTGGGGCGAAGACTGAATCTAAATCTGAAAATCCAGCCGCAGAAAACAGAAGTGAGGCGGAGAAATCTGTTCCTATAGTGAAAAAGGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCTGATAACGAATTTGAAAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTGACATTTGCAGACATTGGTGCTATGGATGATATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTTAAACCTTGTAGGGGTATCCTGCTTTTCGGCCCTCCAGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAATGTCCGTGCATTGTTTACACTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTGGATGAAGTCGATAGCATGCTCGGCCAGAGAACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGACTGCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGCAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGTGTGACTGCAGCGTATCGGCCTGTTCGAGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGAGAGACAAAGGAAAAGGAGAAGCAGAAGCAGGAGGAGGAGGAGAAGGAAAATGAGAAGGAGAAGCAGGAGAAGGAGAAGGAGACGGAGATGGAGACCGAGAACGAGAAGAAGGAGAAGGAAAATAACTCAGAAGAAGTTACAGGTACAAAAGAGGCGGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATACTTCTTATAG 2622 42.6 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLLDGKNSNVTFDEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTFERMSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRCTDGSSNLPKLRRNASAASDISSISSNYASTNPASAKRTNSWCFDEKLFLQSLYKVLVSVSETSSIILYLRDVERLLLQSQRMYNLFNRFLNKLSGSVLVLGSRMVDVENDCGDVDDRLTNLFRYSVEVRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHITEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEPQRDEAVGAKTESKSENPAAENRSEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRETKEKEKQKQEEEEKENEKEKQEKEKETEMETENEKKEKENNSEEVTGTKEAEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 704442 711972 + ClCG01G000810.1 Cla01g00082 263671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00082 873 MobiDBLite consensus disorder prediction 184 214 - -
Cla01g00082 873 Gene3D - 694 777 - -
Cla01g00082 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 762 IPR027417 -
Cla01g00082 873 MobiDBLite consensus disorder prediction 445 503 - -
Cla01g00082 873 Gene3D - 521 693 IPR027417 -
Cla01g00082 873 MobiDBLite consensus disorder prediction 759 819 - -
Cla01g00082 873 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 873 - -
Cla01g00082 873 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Cla01g00082 873 MobiDBLite consensus disorder prediction 445 486 - -
Cla01g00082 873 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 873 - -
Cla01g00082 873 CDD AAA 560 693 - -
Cla01g00082 873 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Cla01g00082 873 Pfam AAA+ lid domain 714 757 IPR041569 -
Cla01g00082 873 SMART AAA_5 558 695 IPR003593 -
Cla01g00082 873 Coils Coil 753 817 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00082 - - - csv:101216426 1517.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00082 Cla-Chr1:704442 Cla09g00557 Cla-Chr9:5145467 2.70E-14 dispersed
Cla01g02406 Cla-Chr1:37670402 Cla01g00082 Cla-Chr1:704442 7.78E-54 transposed
Cla05g00220 Cla-Chr5:1981225 Cla01g00082 Cla-Chr1:704442 1.36E-66 transposed
Cla11g00676 Cla-Chr11:7900753 Cla01g00082 Cla-Chr1:704442 3.60E-64 transposed
Cla01g00082 Cla-Chr1:704442 Cla07g00737 Cla-Chr7:20540932 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00082 Cla_Chr01 FPKM 9.074059 9.979017 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0