Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00084 ATGTCGGATCCATTACAGAGATACCAAAATCTTGCCCTAACAGACTCTCTGGCGAAGAGTTACACCTACCCACTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAGGTGCTTTCAATAAACTTCCCAAGAATCTCCAATCCCTCATCTACCAACATATTATCACCGCCTTTCATCTCCTCCCGGAAATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATTCAGCGATAGTAGAATTTAAGAAAGCAATGGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATGTTCAATCTTTAGTTTCAGCTGGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATTTGTGGCAGTTGCAGTATACAAAATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATAAAGACAGTGTGGATGACTTTGCTACCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATATGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAACGATCATGGTAGAAATAAAAATAAACTAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTAGGCTTCCGAACTGA 870 41.49 MSDPLQRYQNLALTDSLAKSYTYPLACKELSFLIRGAFNKLPKNLQSLIYQHIITAFHLLPEMQTSSAASAAHLLAQGVEAALPKQKRNSAIVEFKKAMVAHKRRSKAHQEEKGSAQLPQDVLLHIFRFLDVQSLVSAGLVCRSWNVAADDEYLWQLQYTKFFGCSDDNSKPINDKDSVDDFATAPHVDWKEEFKRAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNKLIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSRLPN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 716550 720232 + ClCG01G000830.1 Cla01g00084 263673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00084 289 PANTHER OS05G0526300 PROTEIN 1 283 - -
Cla01g00084 289 SMART fbox_2 118 158 IPR001810 GO:0005515
Cla01g00084 289 Gene3D - 100 202 - -
Cla01g00084 289 ProSiteProfiles F-box domain profile. 112 158 IPR001810 GO:0005515
Cla01g00084 289 SUPERFAMILY F-box domain 116 198 IPR036047 GO:0005515
Cla01g00084 289 Pfam F-box-like 117 159 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00084 - - - cmo:103482926 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00084 Cla-Chr1:716550 Cla04g00235 Cla-Chr4:7227900 2.24E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g807 Blo06g01140 . . . . . . . . . . Cma15g01060 . . . . . . . . . . . . Cla01g00084 Cam01g0085 Cec01g0084 Cco01g0085 Clacu01g0083 Cmu01g0085 Cre09g2424 . . Cone14ag0045 Cone15ag0050 . Csa05g00097 Chy09g01397 . . . . Bda15g00708 . Bpe12g00445 . . . . Cmo15g01118 . . . . . Cpe13g00282 Bhi12g00767 . . Lac11g0083 . . Lcy12g0065 . . . . . . . Lsi09g00071 . . Cme09g01943
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004262 1 2 1 1 1 1 1 1 1 1 3 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 2 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00084 Cla_Chr01 FPKM 10.202369 13.346891 8.37541 8.906479 16.154705 12.80238 15.110209 16.493448 17.09185 16.987411