Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00104 ATGACTGAAAGTGCTATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATTTGGCTTCAAACTGCTGACGGCTCAATACAACAAGTTGAAGAAGAGGTTGCTATGTTTTGCCCAATGATTTGTCGGGAAATACTACAAACAGGGATGGGATCCTCCAAAAATTATGCAATATCTCTTCCACAGCGAGTGAATCCTGCTATTTTAGGTTTAATTCTTGACTATTGCAGGTTTCATCAAGTACCAGGTCGCTCCAATAAGGAGCGTAAAACATTTGATGAGAAATTCATTCGCATGGATACAAAAAAGCTGTGTGAGTTGACATCTGCTGCTGACAGCCTCCAATTGAAACCTTTGGTTGATCTAACTAGTCGAGCACTTGCACGAATTATTGAAGGAAAGACTCCAGAGGAGATAAGGGAGACATTCCATCTACCTGATGATCTCACGGAGGAGGAAAAGCTGGAGCCCTTACGAAACATAACAGATGATCCGCGCATTCGGCTCTTAAATAGATTATATGCACGGAAGAGGAAAGAATTAAGAGAAAGAGAGAAGTTGAAGAATGTTGAGATTGAGGAGCGGGTGGATGATAGATCAGTCGATGACCTTTTGTCTTTTATAAATGGAGGAGATGGAGATTCAAAGGCAGTTAAAACAAACAAAAACAAAAAGAAAAATCGGAGGAGAAAAGATCAACAGAAGGATTCTTCTTCAACCAATGAAAACGGGAACCATGATAAAATAGGGGAGTTGGATGCTCTTCCTTGTTGCCAGAATAATGAGTTTAACAAGATTTTGGCGGCATCTCCGAGTAGAACTGTGAAATCACAGGATTCGGCAGCTGCCATGTATTCATCTAAGATTGACTTTGATGATGCTGATATATATGATGATCTAGATCCTGCGATGAAAGAGGAACTTGACAGGGAAGTAGAAGACTTCGCTAGAAGATTGAATTCAGATTGGCCGGAAAGAGTGCAAGAAATTTTATCACTAGGCCAAGAACGAAAACTGGTGACAGTGTTAACTGGCAATGGTTCATCACCCAGATTCACAAGTGCTGATAGGAGCTCAGTCGATTCAAACGAGCCAGATTACGGGAGAAGCTACTGTTGGAAACTTGGAAGGAAGCAAGAGTCTGCAGGATTTCAGTGTAAATGGTGGATGGGAAGAAGATTTATAAGCATTATTACATGGAGAAGATGCAAATTTTTGTTTTGTGGGATTCTGTATGGCAGAGAAGTGAAAAGAGAGTCATAA 1260 40.87 MTESAMAVVKPEMKSYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELREREKLKNVEIEERVDDRSVDDLLSFINGGDGDSKAVKTNKNKKKNRRRKDQQKDSSSTNENGNHDKIGELDALPCCQNNEFNKILAASPSRTVKSQDSAAAMYSSKIDFDDADIYDDLDPAMKEELDREVEDFARRLNSDWPERVQEILSLGQERKLVTVLTGNGSSPRFTSADRSSVDSNEPDYGRSYCWKLGRKQESAGFQCKWWMGRRFISIITWRRCKFLFCGILYGREVKRES 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 918198 922854 - ClCG01G001065.1 Cla01g00104 263693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00104 419 SUPERFAMILY POZ domain 15 79 IPR011333 -
Cla01g00104 419 SUPERFAMILY Skp1 dimerisation domain-like 90 157 IPR036296 GO:0006511
Cla01g00104 419 SMART skp1_3 14 115 IPR001232 GO:0006511
Cla01g00104 419 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Cla01g00104 419 PANTHER OS03G0107000 PROTEIN 1 266 - -
Cla01g00104 419 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Cla01g00104 419 MobiDBLite consensus disorder prediction 211 251 - -
Cla01g00104 419 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
Cla01g00104 419 PANTHER SKP1 1 266 IPR016897 GO:0006511
Cla01g00104 419 Coils Coil 169 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00104 - - - bhj:120067349 640.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00104 Cla05g00882 CCT
Cla01g00104 Cla05g00882 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00104 Cla-Chr1:918198 Cla02g00422 Cla-Chr2:4137253 7.24E-17 dispersed
Cla01g00104 Cla-Chr1:918198 Cla08g01401 Cla-Chr8:26917323 1.35E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00104 Cla_Chr01 FPKM 32.401985 34.338913 18.188828 18.191397 4.208551 3.894888 5.099334 1.329625 1.243323 1.381133