Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00106 ATGGTAGTTAGGGTTTCGGATGGAAGACAAAGCAACCCCATCAGACTTGACTTCGCCGGTATCTTGTGGGCTGGGGGGTCGTGGCGTGGTGTGGGCCTTCGACGCTGGAAAATAGAGCTGACAGCCAAATTTTATGGTTTGTTACAAATACAACGTGAATTTGGGCACAAATGGCGAGTGTGCAAAGAGATTCGGATAACTCCCGATTGCGTCTTCAAATTCCATCTCTCTTTAATCGAAGCAATGTGGTTATTCAGAAGGAAAGGACCCTCTGGATTTTCCTCTTCTTCCACTGCCGAGGAAGTTACCGACGGGATCGATGGCACTGGTCTTACCGCCATTGTTACAGGAGCATCAAGCGGTATTGGCTCGGAAACTGCACGTGTTCTTGCATTACGTGGAGTCCATGTCATTATGGGTGTTAGGAATTTAGAAGCTGGTAGAAATGTCAGAGAAACCATTGTGAAGGAGAACCCCTCTGCAAAAATTGATGCTATGGAGTTGGATCTTAGCTCCACGGCGTCTGTAAGAAAATTTGCCTCAGATTACAAGTCGTCTGGGTTTCCACTTAACATCCTCATTAACAATGCAGGAATAATGGCTACCCCTTTTGGACTTTCAAAAGATAACATAGAGCTGCAATTTGCAACAAACCACTTGGGCCATTTCCTTTTGACAAATCTACTTTTGGAAAATATAAAGAAAACTGCCGCTGAAAGTAAGAAAGAAGGAAGAATTGTAAATGTCTCCTCGGAAGCTCATCGTTACTCATATCCTGAAGGCATTCGATTCGATGGAATTAATGATGAATCAAGGTATAATAAAATGCAGGCTTATGGCCAGTCGAAGTTATCTAATGTTTTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGATTAAACATAACTGCAAACTCACTCCACCCGGGGATAATCACCACAAATCTTTTCCGCCATTTCAATTATGGCAACGGTATAGTAAACACCGTTGGCAAACTCATGTTTAAAAATGTTCAACAGGGTGCGGCAACAACCTGCTATGTGGCATTGCATCCACAAGTAAAGGGAGTGAGTGGTGAATATTTTCAGGATAACGGATATTTCAATCGGTCAATTAAAAAATCCCAAAACGAAGCGATTCCCACATGGCGAGTGGCCGTGAAGATTGATCAGATAGAAGAGGGAGGAATGTGGTTTCTTAGCAGGAAAGGGCCATCTGGGTTTTCAGCTTCTTCAACAGCTGAAGAAGTTACAGAAGGAATCGATGGGTCAGGTCTCACAGCCATTGTTACAGGTGCATCAAGTGGCATTGGTACTGAAACTGCTCGTGTTCTTGCATTGCGTGGAGTACATGTAGTAATGGCGGTTAGAAATGTAGCAACTGGTAGGGAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACTTGAGCTCAATGGCATCTGTTCAGAATTTTGCATCAAATTTCAAATCCTCAGGTCTTCCACTGAACATTCTCGTGAATAATGCAGGAGTCATGGCTTCTCCCTTCTTACTCTCGAAGGACAAGATAGAATTGCAGTTTGCAATAAACCATGTGGGACATTTTCTTTTGACAAATCTATTGTTAGAGACATTGAAAAAGACAGCAAAAGAAAGTAACAAAGAAGGAAGGATTGTCAATGTCTCGTCCCGGCGGCACCAATTTTTGTATCGTGAAGGCATCCGGTTTGACAAAATCAATGATCGACCAAGCTATAATGGTCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGAAAGCTCAAGGGAGAAGGGGTGAAGATAACTGCAAATTCACTACATCCTGGAGCCATTCCTACAAACCTATTTCGTTATCATAGCATCATCAACGGTTTTCTTGGCGTTTTGGGTAAACATGTCATGAAGAATGTACAACAGGGAGCAGCGACGACATGCTATGTTGCATTACATCCACAAATCAAAGGGATCAGTGGCCAGTATTTTGCCGACAGTAACATAGCTAAACCAAGTTCACAAGCGAATGATAGTGAATTGGCAAAGAAACTGTGGGACTTCACCCAAAAGTTGATATCTAGTGGTTTGGAAATTCCTTAA 2154 42.71 MVVRVSDGRQSNPIRLDFAGILWAGGSWRGVGLRRWKIELTAKFYGLLQIQREFGHKWRVCKEIRITPDCVFKFHLSLIEAMWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVRETIVKENPSAKIDAMELDLSSTASVRKFASDYKSSGFPLNILINNAGIMATPFGLSKDNIELQFATNHLGHFLLTNLLLENIKKTAAESKKEGRIVNVSSEAHRYSYPEGIRFDGINDESRYNKMQAYGQSKLSNVLHANELTRRFKEEGLNITANSLHPGIITTNLFRHFNYGNGIVNTVGKLMFKNVQQGAATTCYVALHPQVKGVSGEYFQDNGYFNRSIKKSQNEAIPTWRVAVKIDQIEEGGMWFLSRKGPSGFSASSTAEEVTEGIDGSGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVATGREVQEAIVKENPTAKVDTMELDLSSMASVQNFASNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFAINHVGHFLLTNLLLETLKKTAKESNKEGRIVNVSSRRHQFLYREGIRFDKINDRPSYNGLSAYGQSKLANILHASELARKLKGEGVKITANSLHPGAIPTNLFRYHSIINGFLGVLGKHVMKNVQQGAATTCYVALHPQIKGISGQYFADSNIAKPSSQANDSELAKKLWDFTQKLISSGLEIP 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 925278 940791 + ClCG01G001080.2 Cla01g00106 263695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00106 717 Gene3D - 421 714 - -
Cla01g00106 717 Gene3D - 103 390 - -
Cla01g00106 717 CDD retinol-DH_like_SDR_c_like 110 368 - -
Cla01g00106 717 PRINTS Glucose/ribitol dehydrogenase family signature 555 571 IPR002347 -
Cla01g00106 717 PRINTS Glucose/ribitol dehydrogenase family signature 619 636 IPR002347 -
Cla01g00106 717 PRINTS Glucose/ribitol dehydrogenase family signature 429 446 IPR002347 -
Cla01g00106 717 PRINTS Glucose/ribitol dehydrogenase family signature 596 615 IPR002347 -
Cla01g00106 717 PRINTS Glucose/ribitol dehydrogenase family signature 505 516 IPR002347 -
Cla01g00106 717 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 427 687 IPR036291 -
Cla01g00106 717 PANTHER RETINOL DEHYDROGENASE 83 373 - -
Cla01g00106 717 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 110 372 IPR036291 -
Cla01g00106 717 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 83 373 - -
Cla01g00106 717 PANTHER RETINOL DEHYDROGENASE 400 710 - -
Cla01g00106 717 Pfam short chain dehydrogenase 429 569 IPR002347 -
Cla01g00106 717 Pfam short chain dehydrogenase 112 261 IPR002347 -
Cla01g00106 717 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 400 710 - -
Cla01g00106 717 CDD retinol-DH_like_SDR_c_like 427 703 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00106 - - - csv:101213775 566.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00106 Cla07g00772 CCT
Cla01g00106 Cla07g00772 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00106 Cla-Chr1:925278 Cla10g01994 Cla-Chr10:35760210 1.30E-117 dispersed
Cla09g00956 Cla-Chr9:10049976 Cla01g00106 Cla-Chr1:925278 9.43E-10 dispersed
Cla02g01717 Cla-Chr2:32068408 Cla01g00106 Cla-Chr1:925278 7.20E-25 transposed
Cla01g00106 Cla-Chr1:925278 Cla07g00772 Cla-Chr7:21591133 8.30E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00106 Cla_Chr01 FPKM 1.356414 0.554563 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0