Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00114 ATGACTATGAATTTCTTTTGTATCCCTAATGGAACGCCGGTAGCATCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGCCTCCGAGTGGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTTACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATCGGCAACGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTGTCAACGGGACACATTTCCGGCGCCCATCTGAACCCGTCGCTCACCATTGCTTTTGCGGCCCTCCGCCACTTCCCTTGGGTTCAAGTTCCGGCCTACATCGCCGCCCAGGTCTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGTGTTTTCCACCCCTTCATGTCCGGTGGCGTCACCGTCCCCTCTGTCAGCACTGGCCAAGCCTTCGCTCTTGAATTTATCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGATACTCGCGCGGTTGGAGAGTTGGCTGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTCGCTGGGCCCTCAAGCGGTGGTTCGATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCGACGCTAGGGGCAATACTCGGTGCCGGAACTTACACTGCCGTTAAGCTGAGAGACGACGAAGTGGATGCTCCGTCGCAGGCATCTTGGAAAGTTGAAGAAAGGTCCCCACCCATAGAAGAATTAACTTACGATCAGAAGCCAATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTTATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCCGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATCGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCGTTGGCACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTCTAGGCCCCGCTGTGGCTGCCGGAAATTATAAAGAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGTATGTGAGGAGCTTCCGTCGATGA 1707 55.71 MTMNFFCIPNGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAILGAGTYTAVKLRDDEVDAPSQASWKVEERSPPIEELTYDQKPMSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIIAQVSASICASFALKGVFHPFMSGGVTVPSVGTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKELWVYMVAPTLGAIVGAGTYTAVKHKDDEMDHVPPYVRSFRR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1000302 1014547 + ClCG01G001170.2 Cla01g00114 263703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00114 568 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Cla01g00114 568 PANTHER AQUAPORIN NIP5-1-RELATED 12 298 - -
Cla01g00114 568 PANTHER AQUAPORIN NIP5-1-RELATED 306 557 - -
Cla01g00114 568 Gene3D Glycerol uptake facilitator protein. 308 558 IPR023271 -
Cla01g00114 568 Gene3D Glycerol uptake facilitator protein. 68 298 IPR023271 -
Cla01g00114 568 Pfam Major intrinsic protein 338 546 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 Pfam Major intrinsic protein 72 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PANTHER AQUAPORIN NIP2-1 306 557 IPR034294 -
Cla01g00114 568 SUPERFAMILY Aquaporin-like 73 290 IPR023271 -
Cla01g00114 568 SUPERFAMILY Aquaporin-like 337 555 IPR023271 -
Cla01g00114 568 ProSitePatterns MIP family signature. 398 406 IPR022357 -
Cla01g00114 568 PRINTS Major intrinsic protein family signature 417 436 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PRINTS Major intrinsic protein family signature 341 360 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PRINTS Major intrinsic protein family signature 529 549 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PRINTS Major intrinsic protein family signature 461 479 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PRINTS Major intrinsic protein family signature 492 514 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PRINTS Major intrinsic protein family signature 380 404 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00114 568 PANTHER AQUAPORIN NIP2-1 12 298 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00114 Cla-Chr1:1000302 Cla07g01152 Cla-Chr7:28462158 2.52E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00114 K09874 - csv:101212651 549.666