Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00115 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTTGCCGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCGGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTTCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTTGGCGACGGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1080 50.65 MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPLPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGSLISIAAACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWAVKRGSKSLDVGRW 359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 1015685 1017319 - ClCG01G001180.1 Cla01g00115 263704
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00115 359 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Cla01g00115 359 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Cla01g00115 359 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00115 359 SMART serkin_6 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00115 359 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Cla01g00115 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cla01g00115 359 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 342 - -
Cla01g00115 359 Gene3D Transferase(Phosphotransferase) domain 1 120 341 - -
Cla01g00115 359 Pfam Protein kinase domain 49 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00115 359 PANTHER BNAA02G22020D PROTEIN 20 342 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00115 Cla-Chr1:1015685 Cla05g01077 Cla-Chr5:11141462 8.46E-56 dispersed
Cla01g00115 Cla-Chr1:1015685 Cla10g01964 Cla-Chr10:35470374 2.92E-55 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80225 PF00069 Pkinase 8.00E-41 CL0016 Cla PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00115 - - cmax:111468884 605.134