Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00115 | ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTTGCCGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCGGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTTCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTTGGCGACGGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA | 1080 | 50.65 | MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPLPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGSLISIAAACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWAVKRGSKSLDVGRW | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1015685 | 1017319 | - | ClCG01G001180.1 | Cla01g00115 | 263704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00115 | 359 | ProSitePatterns | Protein kinases ATP-binding region signature. | 51 | 73 | IPR017441 | GO:0005524 | |
Cla01g00115 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 7 | 119 | - | - | |
Cla01g00115 | 359 | ProSiteProfiles | Protein kinase domain profile. | 45 | 337 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00115 | 359 | SMART | serkin_6 | 45 | 333 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00115 | 359 | SUPERFAMILY | Protein kinase-like (PK-like) | 30 | 333 | IPR011009 | - | |
Cla01g00115 | 359 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672|GO:0006468 | |
Cla01g00115 | 359 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 20 | 342 | - | - | |
Cla01g00115 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 120 | 341 | - | - | |
Cla01g00115 | 359 | Pfam | Protein kinase domain | 49 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g00115 | 359 | PANTHER | BNAA02G22020D PROTEIN | 20 | 342 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00115 | Cla-Chr1:1015685 | Cla05g01077 | Cla-Chr5:11141462 | 8.46E-56 | dispersed | |
Cla01g00115 | Cla-Chr1:1015685 | Cla10g01964 | Cla-Chr10:35470374 | 2.92E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80225 | PF00069 | Pkinase | 8.00E-41 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00115 | - | - | cmax:111468884 | 605.134 |