Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00122 ATGGCGCCATTGCGTTGCTGTGAAAATCAAATTCATCCTTCACTTTCTTCTTGTTTGTGGCGAACGATGAGCTCTCAGTATTCCGGTGAAGACTGTCTCGGTTGGGCCGCAACAGACTCCTCTGGCTTTTTATCTCCTTACAAATTCACTCGTAGGGCTCCTAGAGATGATGATGTTTCAATTACAATAACACACTGCGGAATTTGTTATGCAGATGTAATATGGACAAGAAATAAATTAGGAGATTCAAAATATCCTTTGGTGCCTGGACATGAGATTGCAGGAATTGTGAAAAATGTTGGCTCAAATGTTCAACGAATTAAAGTTGGAGATCATGTTGGGGTAGGAACTTACGTGAATTCTTGCAGACAATGCGAGTACTGTGAAGATTGTCAAGAAGTTAGTTGCACAAGTGGATGCACTCATACTTTTAATTCAATTGATTTTGACGGTACAATTACAAAGGGAGGATACTCCAACTACATAGTTGTTCATGAGAGGCTATCTAACCTTCATTATGTGAAGCTGAATGTACACGTACCGTCTTATACTTTACAAAATAGCTTCTTATCATATTCAGCGAATGGCAAATACTGCTACAAAATACCTGACAATTATCCCTTAGCTTCAGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATTCGGCATAATATGAATCAACCTGGTAAATCTCTTGGTGTGATTGGGCTTGGTGGTCTTGGCCACTTAGCAGTGAAGTTTGGGAAGGCTTTTGGACTGAATGTGACAGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTGAGCGTTCTTGGAGCAGACAAATTTGTTCTCTCATCTGACAACGAGGAAATGAAGGCCTTGTCCAAGTCCCTCGACTTTATTATCGATGCTGCATCTGGTGATCACCCATTTGATACATACATGTCTACATTGAAGATTGGTGGCGTTATGGTTCTGGTGGGGTTTCCTTCTCAAGTCAAGTTTAGTCCTGCTAGCCTTATTTTGGGTATGAGAACCATTTCTGGTAGCGTGACTGGTGGCACCAAAGTGACCCAAGAAATGATCGATTTCTGTGCTACTCATGGAATCTATCCAAACATAGAAGTGATTCCAATTCAGTACTCCAATGAAGCTATCGAAAGGGTAACGAAGAATGATGTCAAGTACCGATTTGTTATAGATATCGAAGGCTCCCTAAAATGA 1224 40.85 MAPLRCCENQIHPSLSSCLWRTMSSQYSGEDCLGWAATDSSGFLSPYKFTRRAPRDDDVSITITHCGICYADVIWTRNKLGDSKYPLVPGHEIAGIVKNVGSNVQRIKVGDHVGVGTYVNSCRQCEYCEDCQEVSCTSGCTHTFNSIDFDGTITKGGYSNYIVVHERLSNLHYVKLNVHVPSYTLQNSFLSYSANGKYCYKIPDNYPLASAAPLLCAGITVYSPMIRHNMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSVLGADKFVLSSDNEEMKALSKSLDFIIDAASGDHPFDTYMSTLKIGGVMVLVGFPSQVKFSPASLILGMRTISGSVTGGTKVTQEMIDFCATHGIYPNIEVIPIQYSNEAIERVTKNDVKYRFVIDIEGSLK 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1137091 1142495 + ClCG01G001260.2 Cla01g00122 263711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00122 407 Pfam Alcohol dehydrogenase GroES-like domain 57 167 IPR013154 -
Cla01g00122 407 SMART PKS_ER_names_mod 36 358 IPR020843 GO:0016491
Cla01g00122 407 Pfam Zinc-binding dehydrogenase 244 366 IPR013149 -
Cla01g00122 407 Gene3D - 35 168 - -
Cla01g00122 407 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 237 264 IPR029752 -
Cla01g00122 407 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 90 104 IPR002328 GO:0008270|GO:0016491
Cla01g00122 407 CDD CAD1 34 401 - -
Cla01g00122 407 Gene3D - 194 402 - -
Cla01g00122 407 PANTHER - 24 168 - -
Cla01g00122 407 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 207 370 IPR036291 -
Cla01g00122 407 PANTHER ALDEHYDE REDUCTASE 24 168 - -
Cla01g00122 407 PANTHER ALDEHYDE REDUCTASE 188 406 - -
Cla01g00122 407 Gene3D - 217 372 - -
Cla01g00122 407 SUPERFAMILY GroES-like 34 400 IPR011032 -
Cla01g00122 407 PANTHER - 188 406 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00122 Cla-Chr1:1137091 Cla02g00079 Cla-Chr2:827566 1.80E-112 dispersed
Cla01g00122 Cla-Chr1:1137091 Cla02g00635 Cla-Chr2:7140410 1.41E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00122 K00083 - csv:101211438 655.981