Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00124 | ATGAATTTTGGAGTGAATAGACTCCAAACTCACCATCTAGAACCTAGAAATAGGTTGGATTTGATCATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGTGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAACAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATTGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAATAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAACGGTGGAGGTGCTTCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAATTGGGATTTAATTTATGTAGCTTTCTTCTTCTTCTTCATCTTCTTCAAAAGGTTTCCTTCTCCATTTTGGGTTTTGGGGGCACTTTCATTACATGTTGGTTTCTCCATGATTTGGAACAAACATTGA | 1272 | 44.18 | MNFGVNRLQTHHLEPRNRLDLIMMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYNWDLIYVAFFFFFIFFKRFPSPFWVLGALSLHVGFSMIWNKH | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1170541 | 1175950 | + | ClCG01G001280.2 | Cla01g00124 | 263713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00124 | 423 | ProSiteProfiles | B3 DNA-binding domain profile. | 56 | 161 | IPR003340 | GO:0003677 | |
Cla01g00124 | 423 | SMART | B3_2 | 56 | 161 | IPR003340 | GO:0003677 | |
Cla01g00124 | 423 | CDD | B3_DNA | 54 | 143 | IPR003340 | GO:0003677 | |
Cla01g00124 | 423 | MobiDBLite | consensus disorder prediction | 26 | 50 | - | - | |
Cla01g00124 | 423 | Pfam | B3 DNA binding domain | 56 | 160 | IPR003340 | GO:0003677 | |
Cla01g00124 | 423 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 39 | 355 | - | - | |
Cla01g00124 | 423 | Gene3D | - | 50 | 172 | IPR015300 | - | |
Cla01g00124 | 423 | SUPERFAMILY | DNA-binding pseudobarrel domain | 53 | 162 | IPR015300 | - | |
Cla01g00124 | 423 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 39 | 355 | IPR044800 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00124 | Cla-Chr1:1170541 | Cla06g00220 | Cla-Chr6:2625118 | 1.12E-61 | dispersed | |
Cla03g00943 | Cla-Chr3:15722651 | Cla01g00124 | Cla-Chr1:1170541 | 3.48E-39 | transposed | |
Cla05g02328 | Cla-Chr5:34860451 | Cla01g00124 | Cla-Chr1:1170541 | 2.36E-46 | transposed | |
Cla06g01223 | Cla-Chr6:25468459 | Cla01g00124 | Cla-Chr1:1170541 | 4.31E-26 | transposed | |
Cla03g01321 | Cla-Chr3:28238405 | Cla01g00124 | Cla-Chr1:1170541 | 7.03E-26 | transposed | |
Cla01g00124 | Cla-Chr1:1170541 | Cla07g00776 | Cla-Chr7:21656637 | 2.24E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60335 | PF02362 | B3 | 9.60E-29 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00124 | - | - | csv:101211271 | 534.258 |