Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00124 ATGAATTTTGGAGTGAATAGACTCCAAACTCACCATCTAGAACCTAGAAATAGGTTGGATTTGATCATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGTGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAACAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATTGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAATAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAACGGTGGAGGTGCTTCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAATTGGGATTTAATTTATGTAGCTTTCTTCTTCTTCTTCATCTTCTTCAAAAGGTTTCCTTCTCCATTTTGGGTTTTGGGGGCACTTTCATTACATGTTGGTTTCTCCATGATTTGGAACAAACATTGA 1272 44.18 MNFGVNRLQTHHLEPRNRLDLIMMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYNWDLIYVAFFFFFIFFKRFPSPFWVLGALSLHVGFSMIWNKH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1170541 1175950 + ClCG01G001280.2 Cla01g00124 263713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00124 423 ProSiteProfiles B3 DNA-binding domain profile. 56 161 IPR003340 GO:0003677
Cla01g00124 423 SMART B3_2 56 161 IPR003340 GO:0003677
Cla01g00124 423 CDD B3_DNA 54 143 IPR003340 GO:0003677
Cla01g00124 423 MobiDBLite consensus disorder prediction 26 50 - -
Cla01g00124 423 Pfam B3 DNA binding domain 56 160 IPR003340 GO:0003677
Cla01g00124 423 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 39 355 - -
Cla01g00124 423 Gene3D - 50 172 IPR015300 -
Cla01g00124 423 SUPERFAMILY DNA-binding pseudobarrel domain 53 162 IPR015300 -
Cla01g00124 423 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 355 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00124 Cla-Chr1:1170541 Cla06g00220 Cla-Chr6:2625118 1.12E-61 dispersed
Cla03g00943 Cla-Chr3:15722651 Cla01g00124 Cla-Chr1:1170541 3.48E-39 transposed
Cla05g02328 Cla-Chr5:34860451 Cla01g00124 Cla-Chr1:1170541 2.36E-46 transposed
Cla06g01223 Cla-Chr6:25468459 Cla01g00124 Cla-Chr1:1170541 4.31E-26 transposed
Cla03g01321 Cla-Chr3:28238405 Cla01g00124 Cla-Chr1:1170541 7.03E-26 transposed
Cla01g00124 Cla-Chr1:1170541 Cla07g00776 Cla-Chr7:21656637 2.24E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60335 PF02362 B3 9.60E-29 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00124 - - csv:101211271 534.258