Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00127 ATGGATACCGTACTTCAAAGAACTTCGTTTGGTTCTATCATTTATTCTTATTTCCTACGTTGTTTTGGAAATTCCCATAATCATAGAAATCTTAATCTTCATCATCATCATCATCATCACAAAAGCTTCAATCATATCTTCTTCAATAACATGCCAAAGCCAAAACCTCTTTCCTTGCAGACTGTTGAACTAAAAGTCAGGATGTGCTGCAGTGGTTGTGAACGGGTCGTTAAAGATGCGATCTACAAACTAAGAGTAGGGGTTGACTCGGTCGAGGTGAACTTGGAGCTAGAGAAGGTGACGGTGATCGGGTATGTCGATCGAAACAAGGTACTAAAGGTAGTCCGAAGGGCCGGGAAGAGGGCGGAGTTTTGGCCATACCCAGAGCCACCGTTGTACTTCACATCAGCAACTGATTACTTCAAAGATACAACCCGTGAGTTCAAAGAGAGCTATAACTATTACAGACATGGATATAATATTGGGGAGAAACACGGAATGATTCCGATGTCTCATCGTGGAGATGACAAAGTGAGCAACATGTTCAATGATGACAATGTCAATGCTTGTCATGTCATGTAA 582 41.58 MDTVLQRTSFGSIIYSYFLRCFGNSHNHRNLNLHHHHHHHKSFNHIFFNNMPKPKPLSLQTVELKVRMCCSGCERVVKDAIYKLRVGVDSVEVNLELEKVTVIGYVDRNKVLKVVRRAGKRAEFWPYPEPPLYFTSATDYFKDTTREFKESYNYYRHGYNIGEKHGMIPMSHRGDDKVSNMFNDDNVNACHVM 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1220927 1222677 + ClCG01G001310.1 Cla01g00127 263716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00127 193 CDD HMA 63 123 IPR006121 GO:0046872
Cla01g00127 193 Pfam Heavy-metal-associated domain 65 120 IPR006121 GO:0046872
Cla01g00127 193 ProSiteProfiles Heavy-metal-associated domain profile. 68 124 IPR006121 GO:0046872
Cla01g00127 193 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 44 16 193 - -
Cla01g00127 193 Gene3D - 58 123 - -
Cla01g00127 193 SUPERFAMILY HMA, heavy metal-associated domain 60 127 IPR036163 GO:0046872
Cla01g00127 193 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 16 193 IPR045181 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00127 - - - csv:101210939 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00127 Cla-Chr1:1220927 Cla05g01012 Cla-Chr5:10225265 3.20E-31 dispersed
Cla01g00127 Cla-Chr1:1220927 Cla07g00261 Cla-Chr7:2895176 3.17E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g278 . . . . . . Bma07g01048 . . . . . . Car15g01202 . . Cpe05g00759 . . . . . . . . . . . . . . . . . . . Csa05g00144 . . . Blo19g00129 Bda07g00162 Bda09g00627 Bpe08g00914 Bpe11g00382 . . . . . . . . . . . . . . . . . . Cla01g00127 Cam01g0129 Cec01g0130 Cco01g0131 Clacu01g0125 Cmu01g0127 Cre09g2378 Lsi09g00117 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007419 3 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00127 Cla_Chr01 FPKM 4.399073 3.871761 1.735718 1.56798 2.176081 1.471361 0.0 2.118665 0.0 2.019444