Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00130 ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGA 264 49.24 MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1247894 1251252 + ClCG01G001340.1 Cla01g00130 263719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00130 87 PANTHER OSJNBA0064M23.16 PROTEIN 5 87 - -
Cla01g00130 87 Pfam Tim10/DDP family zinc finger 23 82 IPR004217 -
Cla01g00130 87 Gene3D Mitochondrial import inner membrane translocase subunit tim13 like domains 29 86 IPR035427 -
Cla01g00130 87 PANTHER TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG 5 87 IPR039238 GO:0005758
Cla01g00130 87 SUPERFAMILY Tim10-like 34 84 IPR035427 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00130 K17781 TIM13; mitochondrial import inner membrane translocase subunit TIM13 - csv:101210451 161.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00130 Cla-Chr1:1247894 Cla06g01766 Cla-Chr6:31156663 4.28E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g276 . . . . . . . . . . Cma02g00953 Cma15g01334 . . . . Cpe05g00761 . . . . . . . . . . . . . . Cone8ag0568 . . . . Csa05g00147 Chy09g01348 . . . . Bda09g00628 Bpe08g00912 . . . . Cmo02g00961 . . . . . . . Bhi12g00067 . . . . . Lcy12g1489 Cla01g00130 Cam01g0132 Cec01g0133 Cco01g0134 Clacu01g0128 Cmu01g0130 Cre09g2375 . . . Cme09g01896
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002836 0 1 0 3 1 1 2 2 2 1 3 2 4 2 1 2 2 1 2 2 2 2 2 0 2 2 3 1 1 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00130 Cla_Chr01 FPKM 8.524107 8.912017 11.142496 10.17316 13.365398 12.216457 14.218733 23.488302 21.664362 25.105963