Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00132 ATGGCGTCTTCCCTCTCCACCTATCATCAACATCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTACTGCTAATTCCAAGCATCTTTCCTCTCCATTTCTCACTTCACCCTCGTCTGGGTTGTCTTCAAATTTCAATTTCTCGCTTCGGTTCCTCAGTAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCCCCTCCTAAAGCCAAGCCCGGTGGAAAATCCAAGAAGGTAATTGGGATGATAAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCTGACAAGGCCGGCTACGTTATTCCAGTCGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCCGGAGTTGAAAAAGGATCAAAAGATCCTAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGCGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTCCTTGAACCTAAAGAGAAGGAACTTGTGTAG 705 45.25 MASSLSTYHQHHLLSPSFSSKITANSKHLSSPFLTSPSSGLSSNFNFSLRFLSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKEKELV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1274549 1278500 - ClCG01G001360.1 Cla01g00132 263721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00132 234 SMART rl11c 91 222 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 PANTHER 60S RIBOSOMAL PROTEIN L12 63 222 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 Gene3D - 82 153 IPR036796 -
Cla01g00132 234 Pfam Ribosomal protein L11, RNA binding domain 153 221 IPR020783 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 Pfam Ribosomal protein L11, N-terminal domain 91 148 IPR020784 -
Cla01g00132 234 Hamap 50S ribosomal protein L11 [rplK]. 87 223 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 Gene3D - 154 234 IPR036769 -
Cla01g00132 234 ProSitePatterns Ribosomal protein L11 signature. 208 222 IPR020785 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 SUPERFAMILY Ribosomal protein L11, C-terminal domain 149 222 IPR036769 -
Cla01g00132 234 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 81 166 IPR036796 -
Cla01g00132 234 TIGRFAM L11_bact: ribosomal protein uL11 85 222 IPR006519 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 CDD Ribosomal_L11 91 221 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cla01g00132 234 PANTHER RIBOSOMAL PROTEIN L11 63 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00132 K02867 RP-L11, MRPL11, rplK; large subunit ribosomal protein L11 - csv:101210200 399.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00132 Cla-Chr1:1274549 Cla02g02333 Cla-Chr2:38435296 3.37E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00132 Cla_Chr01 FPKM 18.753273 19.199348 19.768118 19.207062 16.488405 17.342228 15.669993 27.184361 26.038248 27.624678