Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00140 ATGACCGTTCCTGCTTCCGGTTTTATGATGGTAAACGGCGGATCAAGCTGTCTCCCACTCCCCCCAGATGTCGAGAATCAGACCGTCTCCGACCTGGTGAAACAATCCGAGTCTAATTTGAAAGAAGGCAATCTTTACTATGTTGTTTCTAATCGGTACTGCTTCTTCTGTTTTTCCAATATTCAGTTACGCAAATTGGCGGATTATCAGATTTTAGTCGTGGGTTATTCAAATTGGTGGTATAGAAGATGGCAATTATATGTCGGACTGTCCACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACCGTAATATGGTTCCTCCAAACGTGGTTGAAAGACCCGGTCCTATTGATAATTCAGATATAATCGTTAATGGAAGTGATTCTTCTAAGAACAATGATTTAGAGCTAAAAAGTTTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCTAGTGAAGTGTGGGAAAAGCTTTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGATGATATCTGTAGGTGTCAATCAAAAGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATGCCAGAGATGCAAGTGAATGCACCATACGGTTGAGCAAGAAGGCCACCATATTTGATCTTCGTGAGAAGGTGTGTGCACTTAAAGGAATAAAGCAAGAAAAGGCATGTATATGGGACTATTTCAACCAGCAGAAACAATTAATATTGGATCCAACAACCCAAACCCTCGAAGAACTAAACTTGCAGATGAATCAATATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACCGGCATGGATGCCACTCGAAACGAGTTAGCTTTGGTAGCCCTTGAACCTTCAAGGTCAGCTCTTTCAATTGCAGGGGGGCCAGTGATGTCAAATGGGCATTCTTCCGGTTATGGTTACCAGGGAAGTTCTTTAAGCACATCTGTTTCTGACATCGATGATAGAAATGATCTTAGTAATACTGCAAAGAAAAAAGAGAAGGGTGGTTTGGCAGGGCTGCAGAATTTAGGAAATACATGTTTTATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCACCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGAGAATCCTTTGGGAATGCACGGAGAATTAGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCGGGACAAACCACAATTGCACCACGTGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAGGATCTGAATCGTGTTAAGCGAAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAAAGCAAGGAATGACTCTTTAATTGTGGATGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACTCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTACACCAAAGATCTCACCAATGTATTGGCTTCTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTCGCAGAGGTTTATGATAACCGTATTTTCCGATATTTGGATAACCCTCTTGAATCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCCTATCGCCTTCCGAAAAGAGAGTCTGGAAGACCAAAGCTGGAGATCATTCACAGATCGCTGGAAAAATGCTCCATGGACCGTGTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGGGAAGACTTCCATAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTGCCGCTGAGGAGAACATACCCTTCAACTAAAGCTCATGGTCATGGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAACCAGGCAACTGTGGTCCTCAGTCTGTTTCTAGGAGTCAGTCAATTGACATTGAAGTAGAGGAAGCATCTGAAAAAGAGTCATCCTTTCAGCTTCTTTTAACGGATGATAAGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTACTATAAAATATGGTCCGCTTATAAAGGTTTTCTTAGATTGGAACGACAGAGAACATGAATTATATGATGTGAGCTACATTAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTGTTTTCTTGTTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCCAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAGCGTTTTTCATATAGCAGATTCCTTAAAAACAAACTTGATACCTTTGTTGATTTCCCCATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAATCTTACTTATACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGTGGTGGGCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGCCACGTTTCCTCTGTTGGCGAAGAAGAGATCAAGACCTCAGCTGCTTATTTGTTGTTTTATCAAAGAGTCGAAATTTGA 2826 41.01 MTVPASGFMMVNGGSSCLPLPPDVENQTVSDLVKQSESNLKEGNLYYVVSNRYCFFCFSNIQLRKLADYQILVVGYSNWWYRRWQLYVGLSTEEFSSKDHSSDSQHRNMVPPNVVERPGPIDNSDIIVNGSDSSKNNDLELKSFLEERRDYVLVPSEVWEKLYDWYKGGPPLPRKMISVGVNQKNFSVEVYLLCLKLIDARDASECTIRLSKKATIFDLREKVCALKGIKQEKACIWDYFNQQKQLILDPTTQTLEELNLQMNQYILLEVDGPTPQTGMDATRNELALVALEPSRSALSIAGGPVMSNGHSSGYGYQGSSLSTSVSDIDDRNDLSNTAKKKEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELALAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDAEVADECWRYHKARNDSLIVDGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGYTKDLTNVLASACCLKSDENLLLAEVYDNRIFRYLDNPLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSMDRVKGMERKLFGTPLVTYLGEDFHSGADINAAVSKILLPLRRTYPSTKAHGHGSKENGFVSEMNDEPGNCGPQSVSRSQSIDIEVEEASEKESSFQLLLTDDKGLSCKPIDKDSTIKYGPLIKVFLDWNDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRFLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSSVGEEEIKTSAAYLLFYQRVEI 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1343451 1351719 - ClCG01G001440.2 Cla01g00140 263729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00140 941 Gene3D Cysteine proteinases 330 537 - -
Cla01g00140 941 Gene3D - 70 190 IPR035927 -
Cla01g00140 941 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 347 939 IPR028889 -
Cla01g00140 941 SUPERFAMILY DUSP-like 78 177 IPR035927 -
Cla01g00140 941 CDD Peptidase_C19R 784 937 - -
Cla01g00140 941 Gene3D Cysteine proteinases 697 941 - -
Cla01g00140 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 53 - -
Cla01g00140 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 881 898 IPR018200 GO:0004843|GO:0006511
Cla01g00140 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 76 940 - -
Cla01g00140 941 Pfam DUSP domain 77 177 IPR006615 GO:0004843
Cla01g00140 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 76 940 - -
Cla01g00140 941 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 16 53 - -
Cla01g00140 941 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 348 363 IPR018200 GO:0004843|GO:0006511
Cla01g00140 941 SMART dusp 63 180 IPR006615 GO:0004843
Cla01g00140 941 Pfam Ubiquitin carboxyl-terminal hydrolase 348 936 IPR001394 GO:0004843|GO:0016579
Cla01g00140 941 SUPERFAMILY Cysteine proteinases 345 939 IPR038765 -
Cla01g00140 941 Gene3D - 191 275 - -
Cla01g00140 941 ProSiteProfiles DUSP domain profile. 37 177 IPR006615 GO:0004843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00140 - - - csv:101208487 1664.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00140 Cla-Chr1:1343451 Cla03g00227 Cla-Chr3:2718369 0 dispersed
Cla01g00140 Cla-Chr1:1343451 Cla02g02183 Cla-Chr2:36946811 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00140 Cla_Chr01 FPKM 16.598705 16.586142 13.898629 12.015476 11.869104 8.058597 11.00327 6.567385 6.945708 7.512203