Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00156 ATGAGTTGCGGTTCGGATTTGATGATGTCTGGGAATCCAGAGGCTGATGATCGTGAGATTGTTGAGAAGGATCCATCTGGACGATATATACGGTATGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTATACAAAGCATTCGATGAAGTTGGTGGAATCGAAGTTGCTTGGAGTCAAGTGGACATTGAAGATGTTTTGCAGTCACCAGAACAACTTCAAAGATTGTATTCTGAAGTCCATCTGTTGAAGTCACTGAAACATGAAAATATCATCAAGTTCTATAGCTATTGGGTTGATGATAAGCATAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCATAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGAGGTTTAACATATTTACATGGTCATGACCCTCCAATCATTCACAGGGATTTGAAATGTGATAATATATTCGTCAATGGGAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTGATGCAGCAGCCTACTGCTCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAAGACTACAATGAACTTATTGACATATATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTCGAGAAAGTGCTGGACCCTCAAGTTAAGCAATTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGATTACCTGCAAGTGAACTCTTGAAAGATCCTTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTCTGAACTTTCAAGGTTATTGAATGAGCAGTTCAAATCTGTAGATCCTCCACTGCTTGGTTCTCATCCAATGGACACAGACCCTAACTCCAGCAAACTCTCAGGCTCAGTGGCCTCATCTGTCAAAAGCAATAATGGAATTTCTCACTTTACAACTCTAGAACTGAAGAGGCTCACTGAGAACAATGAATTGACACTGAAAGGGGACATGACTGATCATAATACAATGTCATTCTATTTGCGTATTGCTGAATTATATGGTAAATCTAGGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCTATGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCGACAATCATAGCAAAACTAATTGATGAATTAATTGCCAAGTTTGTTCCTAGCTGGAAACCATGTCCAAACTATTGTGAAGAACAAAATACCCCACATAGTTCTTCTGAAACTCAAGAGGATAAGACCTTCATTCCTCCTTTTTTCTCTGAGCTAGTACTGTCATCTCCCATGGTGGCTGCTGCTGCAAGGAATAATCCAACGGATTTGACCAAGGTTGAAGATCAAGAAAACAAGCAGTCGATTATTTCGTGTGCTTCTGTGGAATACATTTACTCAACTGTCTCAGATTACAGCATAGGAAAAGGATCAGAATGTGGTGAGTTTGGCCACCCTGAATGTGACAAAGCTTATATTAGCAGTGGAACAATTGATTTAGATGCAGAAGCTGTTGGATCTATTCCGACGATGATCGATTTTGCAAAACCATCTCTAATCTCCTCCTGCTCTGGAATGTCCAAAGAATTGAGTTTATCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGATCACCAAGATGAACTCAAGATGGAGATTGATGCTATTGACTTGCAATACCACCAATGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTACTGCTATTTGA 1902 40.12 MSCGSDLMMSGNPEADDREIVEKDPSGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDKHKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELIDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSSELSRLLNEQFKSVDPPLLGSHPMDTDPNSSKLSGSVASSVKSNNGISHFTTLELKRLTENNELTLKGDMTDHNTMSFYLRIAELYGKSRNIHFAFYLDSDTSMAIALEMVEQLELSNEDATIIAKLIDELIAKFVPSWKPCPNYCEEQNTPHSSSETQEDKTFIPPFFSELVLSSPMVAAAARNNPTDLTKVEDQENKQSIISCASVEYIYSTVSDYSIGKGSECGEFGHPECDKAYISSGTIDLDAEAVGSIPTMIDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKATAI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1585161 1588581 - ClCG01G001600.1 Cla01g00156 263745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00156 633 CDD STKc_WNK 28 287 - -
Cla01g00156 633 Gene3D Transferase(Phosphotransferase) domain 1 113 294 - -
Cla01g00156 633 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00156 633 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 628 - -
Cla01g00156 633 MobiDBLite consensus disorder prediction 313 336 - -
Cla01g00156 633 Gene3D Phosphorylase Kinase; domain 1 14 111 - -
Cla01g00156 633 ProSiteProfiles Protein kinase domain profile. 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00156 633 SMART serkin_6 30 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00156 633 SUPERFAMILY Protein kinase-like (PK-like) 32 288 IPR011009 -
Cla01g00156 633 PANTHER WNK KINASE 13 628 - -
Cla01g00156 633 Gene3D - 370 470 - -
Cla01g00156 633 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 382 429 IPR024678 GO:0004674|GO:0005524
Cla01g00156 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cla01g00156 633 MobiDBLite consensus disorder prediction 320 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00156 Cla-Chr1:1585161 Cla05g00072 Cla-Chr5:738084 8.29E-10 dispersed
Cla01g00156 Cla-Chr1:1585161 Cla06g00582 Cla-Chr6:7111152 2.30E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80226 PF00069 Pkinase 1.70E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00156 K08867 - csv:101207748 1152.89