Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00159 ATGGATAACCTTGAAAACTGTTCTAAAGCAGCTTTAGTTGAATTTGTTGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAATCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCGAACCATCAAGATCATCATCATTTCATCACCAATAGCCACCCCGAAATCGTTGCCCCTGCGATTGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAATTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 936 44.98 MDNLENCSKAALVEFVEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSTSPTPSSSQPIPKKILDLPQNPKSTQDLNLFFPPSNHQDHHHFITNSHPEIVAPAIASSSSASTVATAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1609633 1611517 - ClCG01G001630.2 Cla01g00159 263748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00159 311 MobiDBLite consensus disorder prediction 286 305 - -
Cla01g00159 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 28 307 - -
Cla01g00159 311 Pfam Dof domain, zinc finger 49 105 IPR003851 GO:0003677|GO:0006355
Cla01g00159 311 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Cla01g00159 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 307 IPR045174 GO:0003700|GO:0006355
Cla01g00159 311 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Cla01g00159 311 MobiDBLite consensus disorder prediction 280 311 - -
Cla01g00159 311 MobiDBLite consensus disorder prediction 92 142 - -
Cla01g00159 311 MobiDBLite consensus disorder prediction 102 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00159 Cla-Chr1:1609633 Cla02g02034 Cla-Chr2:35380992 1.19E-39 dispersed
Cla06g00243 Cla-Chr6:3018432 Cla01g00159 Cla-Chr1:1609633 5.50E-42 transposed
Cla08g00668 Cla-Chr8:18984415 Cla01g00159 Cla-Chr1:1609633 1.15E-34 transposed
Cla01g00029 Cla-Chr1:197749 Cla01g00159 Cla-Chr1:1609633 5.05E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60337 PF02701 zf-Dof 4.60E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00159 - - cmo:103482848 405.986