Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00160 ATGATGGATTTGATTTACCGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATACGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGAATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTTCAGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACTATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGTTTCCAATTCTTCACCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACAAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGCCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCAGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAACATTATAGGTATGCATGTCGATAGTGCCTTCGTAGTTGCGAGACAAGTTGAATTAGTGTTTGAACAGAAATTTATTACATATTTTATGGGTTCAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGTGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCGCCGGTTCATATAATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTTGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCATCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGCGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTTGCCTATTCGGTTATGA 2316 42.49 MMDLIYREEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLNQTFDDRDEEEGDSFRRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVSVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNARKEAKKGWLRKLGAVACIVDNGVGAMKNGVSNSSPKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIGMHVDSAFVVARQVELVFEQKFITYFMGSDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASWKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1644424 1649976 + ClCG01G001640.2 Cla01g00160 263749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00160 771 Gene3D - 527 639 IPR015943 GO:0005515
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Cla01g00160 771 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Cla01g00160 771 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Cla01g00160 771 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Cla01g00160 771 PANTHER WD REPEAT DOMAIN 44 7 771 IPR040324 -
Cla01g00160 771 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 771 - -
Cla01g00160 771 MobiDBLite consensus disorder prediction 668 684 - -
Cla01g00160 771 Pfam WD domain, G-beta repeat 272 304 IPR001680 GO:0005515
Cla01g00160 771 Pfam WD domain, G-beta repeat 371 406 IPR001680 GO:0005515
Cla01g00160 771 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 408 IPR001680 GO:0005515
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 408 - -
Cla01g00160 771 Gene3D - 259 517 IPR015943 GO:0005515
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 306 IPR001680 GO:0005515
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 450 - -
Cla01g00160 771 SUPERFAMILY WD40 repeat-like 269 761 IPR036322 GO:0005515
Cla01g00160 771 MobiDBLite consensus disorder prediction 663 687 - -
Cla01g00160 771 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 450 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 410 449 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 571 611 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 266 305 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 451 490 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 530 570 IPR001680 GO:0005515
Cla01g00160 771 SMART WD40_4 369 407 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00160 - - - csv:101204856 1373.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00160 Cla-Chr1:1644424 Cla01g01526 Cla-Chr1:29773160 1.29E-110 dispersed
Cla04g00811 Cla-Chr4:23169565 Cla01g00160 Cla-Chr1:1644424 2.66E-11 transposed
Cla11g01778 Cla-Chr11:31362953 Cla01g00160 Cla-Chr1:1644424 2.83E-119 transposed
Cla01g00031 Cla-Chr1:231120 Cla01g00160 Cla-Chr1:1644424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00160 Cla_Chr01 FPKM 121.605675 128.029694 91.635857 91.403526 84.534653 85.445801 82.876038 63.950325 68.683151 63.288872