Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00174 ATGTTGCCTGCTACGAAGCAGACAACGAAAGGGACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCAGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACAAGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGTTGTACAAGCTTTAATTCATGTGAGAGTTGCTTTAATAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAACCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAATAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCCACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCTGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCAGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGGTTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTTTAGTAATCCCGGATTCCCCTGGAGTTTGA 2313 44.62 MLPATKQTTKGTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLSCTSFNSCESCFNRGDNGELRVGVRRRARQQTSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDPQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSCVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEVQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGALVIPDSPGV 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1744753 1752184 + ClCG01G001770.2 Cla01g00174 263763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00174 770 Pfam AUX/IAA family 647 695 IPR033389 -
Cla01g00174 770 Pfam AUX/IAA family 705 737 IPR033389 -
Cla01g00174 770 MobiDBLite consensus disorder prediction 618 663 - -
Cla01g00174 770 CDD B3_DNA 192 307 IPR003340 GO:0003677
Cla01g00174 770 SUPERFAMILY DNA-binding pseudobarrel domain 185 336 IPR015300 -
Cla01g00174 770 SUPERFAMILY CAD & PB1 domains 654 735 - -
Cla01g00174 770 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 84 757 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cla01g00174 770 Gene3D - 368 441 - -
Cla01g00174 770 ProSiteProfiles PB1 domain profile. 659 740 IPR000270 GO:0005515
Cla01g00174 770 Pfam B3 DNA binding domain 194 281 IPR003340 GO:0003677
Cla01g00174 770 Gene3D - 654 747 - -
Cla01g00174 770 MobiDBLite consensus disorder prediction 438 452 - -
Cla01g00174 770 Gene3D - 191 309 IPR015300 -
Cla01g00174 770 MobiDBLite consensus disorder prediction 438 489 - -
Cla01g00174 770 ProSiteProfiles B3 DNA-binding domain profile. 194 309 IPR003340 GO:0003677
Cla01g00174 770 PANTHER AUXIN RESPONSE FACTOR 9 84 757 - -
Cla01g00174 770 SMART B3_2 194 297 IPR003340 GO:0003677
Cla01g00174 770 Pfam Auxin response factor 333 411 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cla01g00174 770 MobiDBLite consensus disorder prediction 636 663 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00174 Cla-Chr1:1744753 Cla07g01086 Cla-Chr7:27556698 0 dispersed
Cla01g00174 Cla-Chr1:1744753 Cla03g00607 Cla-Chr3:7181134 1.22E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60340 PF02362 B3 1.20E-18 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00174 K14486 - csv:101209208 1262.67