Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00174 | ATGTTGCCTGCTACGAAGCAGACAACGAAAGGGACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCAGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACAAGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGTTGTACAAGCTTTAATTCATGTGAGAGTTGCTTTAATAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAACCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAATAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCCACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCTGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCAGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGGTTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTTTAGTAATCCCGGATTCCCCTGGAGTTTGA | 2313 | 44.62 | MLPATKQTTKGTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLSCTSFNSCESCFNRGDNGELRVGVRRRARQQTSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDPQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSCVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEVQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGALVIPDSPGV | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1744753 | 1752184 | + | ClCG01G001770.2 | Cla01g00174 | 263763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00174 | 770 | Pfam | AUX/IAA family | 647 | 695 | IPR033389 | - | |
Cla01g00174 | 770 | Pfam | AUX/IAA family | 705 | 737 | IPR033389 | - | |
Cla01g00174 | 770 | MobiDBLite | consensus disorder prediction | 618 | 663 | - | - | |
Cla01g00174 | 770 | CDD | B3_DNA | 192 | 307 | IPR003340 | GO:0003677 | |
Cla01g00174 | 770 | SUPERFAMILY | DNA-binding pseudobarrel domain | 185 | 336 | IPR015300 | - | |
Cla01g00174 | 770 | SUPERFAMILY | CAD & PB1 domains | 654 | 735 | - | - | |
Cla01g00174 | 770 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 84 | 757 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cla01g00174 | 770 | Gene3D | - | 368 | 441 | - | - | |
Cla01g00174 | 770 | ProSiteProfiles | PB1 domain profile. | 659 | 740 | IPR000270 | GO:0005515 | |
Cla01g00174 | 770 | Pfam | B3 DNA binding domain | 194 | 281 | IPR003340 | GO:0003677 | |
Cla01g00174 | 770 | Gene3D | - | 654 | 747 | - | - | |
Cla01g00174 | 770 | MobiDBLite | consensus disorder prediction | 438 | 452 | - | - | |
Cla01g00174 | 770 | Gene3D | - | 191 | 309 | IPR015300 | - | |
Cla01g00174 | 770 | MobiDBLite | consensus disorder prediction | 438 | 489 | - | - | |
Cla01g00174 | 770 | ProSiteProfiles | B3 DNA-binding domain profile. | 194 | 309 | IPR003340 | GO:0003677 | |
Cla01g00174 | 770 | PANTHER | AUXIN RESPONSE FACTOR 9 | 84 | 757 | - | - | |
Cla01g00174 | 770 | SMART | B3_2 | 194 | 297 | IPR003340 | GO:0003677 | |
Cla01g00174 | 770 | Pfam | Auxin response factor | 333 | 411 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cla01g00174 | 770 | MobiDBLite | consensus disorder prediction | 636 | 663 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00174 | Cla-Chr1:1744753 | Cla07g01086 | Cla-Chr7:27556698 | 0 | dispersed | |
Cla01g00174 | Cla-Chr1:1744753 | Cla03g00607 | Cla-Chr3:7181134 | 1.22E-13 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60340 | PF02362 | B3 | 1.20E-18 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00174 | K14486 | - | csv:101209208 | 1262.67 |