Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00179 ATGGCTGGCTCCTGGAGAGCTCGAGGATCTCTGATCGTTCTAGCAATTGTTTTCTTTGGTAATGTTTTCCCCTTCCGATGCCTTAGATCTGGAGGACTGTTCGCAATTTCCATTGCGAAAGAGGAAGCAACAAAATTGGGGACTGTCATTGGGATAGATTTGGGAACAACTTATTCTTGTGTTGGAGTCTACAAGAACGGACATGTAGAAATTATAGCGAATGATCAAGGGAACCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAACCCTGAAAGGACAATCTTTGATGTCAAGAGACTTATCGGTAGAAAGTTTGATGACAAAGAGGTTCAGAAAGACATGAAGCTTGTTCCTTACAAGATTGTGAATAAGGACGGAAAGCCTTACATTCAAGTAAAGATCAAGGATGGTGAGACCAAGGTTTTCAGCCCTGAGGAAATCAGTGCTATGATTCTAACTAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAAATCAAGGACGCCGTGGTCACTGTTCCAGCTTACTTCAATGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGGATCATCAATGAGCCCACTGCGGCTGCCATTGCGTATGGTTTGGACAAGAAAGGTGGCGAGAAGAATATTCTCGTATTTGACCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTTTTTGAGGTTCTCGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGAATTATGGAATACTTCATCAAATTGATTAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGGAGGGAATGTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTCCGCGTTGAGATTGAATCCCTCTTTGATGGCACTGATTTCTCTGAGCCATTGACCAGAGCTCGTTTTGAGGAGTTGAACAATGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAAGCCATGGAAGATGCAGGTTTGGAGAAGAACCAAATTGATGAGATTGTTCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAGGACTACTTTGAAGGCAAAGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAAGGCGGTGAAGAGACTAAAGATATCCTTCTTCTTGACGTTGCCCCTCTTACCCTTGGAATTGAAACTGTTGGTGGAGTAATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACAAAGAAATCTCAGGTCTTCACCACTTACCAAGATCAGCAGACCACCGTCTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAAGACTGCAGGAACCTTGGAAAGTTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCCTGAATGTTAAGGCCGAAGACAAGGGCACCGGTAAATCCGAGAAGATCACCATCACCAATGACAAGGGTCGGTTGAGCCAGGAGGAGATTGACCGAATGGTTCGTGAAGCCGAGGAGTTCGCTGAGGAGGATAAGAAGGTAAAGGAGAGGATTGACGCCCGTAACAGCCTGGAAACGTACATCTACAACATGAAAAACCAGATCAATGACAAGGACAAGCTTGCTGACAAGCTTGAATCTGATGAGAAGGAGAAGATCGAGACCGCCGTTAAGGATGCTCTCGAATGGCTCGATGACAACCAAAGCGCTGAGAAGGAAGACTATGAGGAGAAGCTCAAGGAGGTTGAGGCCGTCTGCAACCCCATCATCACCGCAGTCTACCAGAGGTCCGGTGGTGCTCCTGGCGGCGAATCGGCAGAAGATGATGAGTCTCACGATGAGCTTTGA 2031 47.07 MAGSWRARGSLIVLAIVFFGNVFPFRCLRSGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGESAEDDESHDEL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1799993 1803541 + ClCG01G001810.2 Cla01g00179 263768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00179 676 CDD HSPA5-like_NBD 47 421 IPR042050 -
Cla01g00179 676 PANTHER HEAT SHOCK PROTEIN 70KDA 34 664 IPR013126 GO:0005524|GO:0140662
Cla01g00179 676 Coils Coil 592 612 - -
Cla01g00179 676 Gene3D - 232 406 - -
Cla01g00179 676 MobiDBLite consensus disorder prediction 655 676 - -
Cla01g00179 676 SUPERFAMILY Actin-like ATPase domain 234 425 IPR043129 -
Cla01g00179 676 SUPERFAMILY Actin-like ATPase domain 47 231 IPR043129 -
Cla01g00179 676 Pfam Hsp70 protein 49 656 IPR013126 GO:0005524|GO:0140662
Cla01g00179 676 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 428 581 IPR029047 -
Cla01g00179 676 Gene3D - 582 676 IPR029048 -
Cla01g00179 676 PANTHER LUMINAL-BINDING PROTEIN 34 664 - -
Cla01g00179 676 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 580 663 IPR029048 -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 246 256 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 76 88 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 48 61 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 374 390 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 406 426 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 98 106 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 433 452 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 514 530 - -
Cla01g00179 676 PRINTS 70kDa heat shock protein signature 186 206 - -
Cla01g00179 676 Coils Coil 626 646 - -
Cla01g00179 676 Coils Coil 558 578 - -
Cla01g00179 676 Gene3D - 50 421 - -
Cla01g00179 676 Gene3D Actin; Chain A, domain 4 272 355 - -
Cla01g00179 676 ProSitePatterns Heat shock hsp70 proteins family signature 2. 240 253 IPR018181 -
Cla01g00179 676 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 429 586 IPR029047 -
Cla01g00179 676 Coils Coil 296 316 - -
Cla01g00179 676 ProSitePatterns Heat shock hsp70 proteins family signature 1. 52 59 IPR018181 -
Cla01g00179 676 ProSitePatterns Heat shock hsp70 proteins family signature 3. 377 391 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00179 Cla-Chr1:1799993 Cla11g01102 Cla-Chr11:22417393 0 dispersed
Cla01g00179 Cla-Chr1:1799993 Cla04g00820 Cla-Chr4:23247541 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00179 K09490 - csv:101207505 1284.63