Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00199 ATGGAAGAAATGAGCGAGGATATGACGCTATTGGATGTGACAGAGGATGCACATGTCCAAAATAAGGTCAGGCAAGATGCTCAGGAGAATGAGTATTCGCTGAAACCTGAAAACACCAACATAGTTGAATCACAAGAGATGGTTATACCTGTTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACAGACATTTTGGAGGGTAAGAATCTGAATAGGTGTAAAAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCATTGTATGGATGATGCTGGCGTAATGGTTGAAGAGCTAACTGTGAAAAATCACAACGGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGGCTGCTTTCTAGGCATAGTCAGTGGCAACATCTTTACCAGCTGGGAAGTGGTTCAGGAAGTGGGAGTTCACGTATTGATACTTCTTACAAGAACAATGGTCAGGCAGTAACCCCTGGCTTGGAGAATGGTGGGTATACATCTTTTCCTGAGGCTTTTGCTGGAAGAGCCAGTCGTAATGATTGTGGAGAAGAATTGGAAGAAATGAAGGGTACTGACAATAAGGGTGGTGATACTCATGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGGTTTCCTGAATTTTTTGTTAAAAGTACCTTGAAAGGCAAGGGGATCATTCGCAGAGGTGTACAACTGGAGGGCTTTAATGTTGAACATAGAAACCCTAAGAATGCAAGGATTGCTGGGGGTATTACATTGGCATCTGACTCATCATTACAGCCTGATGTTAAGCCTGTCATTCCTGCTTTGTATAGGAAATCTGAGCATAAACATCGGGGTTCTTCTTTAGATGGCATTAGTCTGAGAGAATGGCTTAAAGTTCCCAACCAAACAGTAAATAAAATTAAATGCTTGTATATATTTAGGCAGGTAGTTGAGCTGGTGGATCGTTCTCATGCACGGGGTGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATGTTGACGACAAATCAGGTGAGGTACTTTGGAACTTTTATTCAAGGGAAAACTTCAGAAAGCCTATTGGTTAAAGACAGTCAGTGTTCAGATAGCCATCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCCTTCCTTTGGTATATCTCCAAAAAAACAAAAAGATGCGCAGAATATGAGTCTTATGGTGCGACACTCTCATTTTCCATTAAAATCTGGTGCCAATCTTGAAACTGCAAATACTAGGGACTGCAATAAGAATGATTTGGAAAATTATAATGAACATTTTGCGGAACAGGGGGGTTGGAACAAGCCTGCTGGCCTTCGTGCATACGATTCTGCCCGGACTTCAATAAGTGACCTATTGGAAGAGACATGGTATGCAAGTCCAGAGGAACTTATTACAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCAGATGGTGCACTGGCTGCAGCGATGTCAAATTTACGTGAGAGGATTCTTCCTCCTAACTTTCTAGCCGATAATTTGAAGGAAGTTGGTTTTTGTCTTTGGCTACTTCATCCTGAACCTGCATCTCGTCCGACAATAAGGGAAATTTTAGAATCAGAACTAATTAATGGAATGGCAAATGTTCCGGCAGCAGAGCTTTCAACATCTATTGATGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTGACATCATTGAATGAGCAAAAGCAGAAACATGCCTCAAAGTTGGTGGAAGACATACGGTATTTAGAATCAGATATTGAAGAGGTCAATAAAAGGCACAGTTCAGCCAAACCCTTGGATAAATCTGGCTTGTCTACTGTGGATGGAAGGGGTGATTTGATCCTTCATGGAGGATATTTAAATTCAGATCTGCGCTCTCAGGTATATAAAATATCACATACCAACGAAGAGAGAATAGCAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAAATCCTTCTGAGAATGACTCGGCAATTCGGACAGATAGCGATTTACTGAAAACTCGTGAAAACTGCTATCTACCACAAAAAGATGATGAGAGGAGCCACGGTGATCGTCTAGGTGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGTTATAGCAAGTTTGAGGTACGTGGAGTACTGAGAAATGGTGATTTTAACAGTTCCTCGAATGTAATCTGTTCCTTAAGTTTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTTAACTCACTCTTTAGTGACTCGGTAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTATTTGCTGGAATAGCTACATCAAGAACTATCTGGCTTCAACTGATTATGATGGTGTTGTTAAGTTATGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAATGAACACACTAAGAGGGCATGGTCTGTTGACTTTTCACAAGTGCATCCTACAAAATTGGCCAGTGGCAGTGATGATTGTGCTGTAAAACTTTGGAGTATTAATGAGAAGAACTGTTTGGGCACAATTTGGAACATAGCAAACGTCTGCTGTGTTCAGTTCTCTGCTCACTCAACTCATTTGCTGGCTTTTGGATCTGCCGATTACAGAACCTATTGCTTTGATCTACGCAATACTAAAGCCCCTTGGTGTGTGTTGGGTGGCCACGAGAAAGCTGTAAGCTATGTGAAATTCTTGGACTCAGGGACCCTTGTTTCTGCATCCACAGACAACACGTTGAAGCTATGGGATCTTAATAGAACCAATCCTTCTGGCTTGTCTACCAATGCTTGCAGTTTAACCCTCAGTGGCCACACTAATGAAAAGAATTTCGTGGGCCTATCAGTTTCCAATGGCTACATTGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATCTCTGCCCATGCCAATGACTTCCTATAAGTTTGGTTCTATCGACCCTATTTCTGGAAAAGAGACCGAGGATGACAATGGACAGTTTGTTTCGAGTGTATGCTGGAGAGAAAAATCCGACATGGTTATTGCAGCCAACTCAAGTGGGTGTATAAAAGTACTGCAAATGGTTTGA 3183 40.94 MEEMSEDMTLLDVTEDAHVQNKVRQDAQENEYSLKPENTNIVESQEMVIPVDGGYSQDYPHEFTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSNNRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNNGQAVTPGLENGGYTSFPEAFAGRASRNDCGEELEEMKGTDNKGGDTHGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQLEGFNVEHRNPKNARIAGGITLASDSSLQPDVKPVIPALYRKSEHKHRGSSLDGISLREWLKVPNQTVNKIKCLYIFRQVVELVDRSHARGVLLHDLRPSSFRMLTTNQVRYFGTFIQGKTSESLLVKDSQCSDSHLTRKRPLEQGNFPSFGISPKKQKDAQNMSLMVRHSHFPLKSGANLETANTRDCNKNDLENYNEHFAEQGGWNKPAGLRAYDSARTSISDLLEETWYASPEELITGCCSAKSNIFSLGVLLFELLGKFESDGALAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTIREILESELINGMANVPAAELSTSIDEEDAESELLLQFLTSLNEQKQKHASKLVEDIRYLESDIEEVNKRHSSAKPLDKSGLSTVDGRGDLILHGGYLNSDLRSQVYKISHTNEERIAKNISQLESAYFSMRSKVNPSENDSAIRTDSDLLKTRENCYLPQKDDERSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMFNRSKLSCICWNSYIKNYLASTDYDGVVKLWDATVGQEVSQFNEHTKRAWSVDFSQVHPTKLASGSDDCAVKLWSINEKNCLGTIWNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNRTNPSGLSTNACSLTLSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVCWREKSDMVIAANSSGCIKVLQMV 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1980313 1986446 + ClCG01G002030.2 Cla01g00199 263788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00199 1060 ProSitePatterns Trp-Asp (WD) repeats signature. 939 953 IPR019775 -
Cla01g00199 1060 PANTHER PROTEIN SPA1-RELATED 2 4 1060 - -
Cla01g00199 1060 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Cla01g00199 1060 PRINTS G protein beta WD-40 repeat signature 812 826 IPR020472 -
Cla01g00199 1060 PRINTS G protein beta WD-40 repeat signature 855 869 IPR020472 -
Cla01g00199 1060 PRINTS G protein beta WD-40 repeat signature 939 953 IPR020472 -
Cla01g00199 1060 ProSiteProfiles Trp-Asp (WD) repeats profile. 835 877 IPR001680 GO:0005515
Cla01g00199 1060 SUPERFAMILY WD40 repeat-like 745 1057 IPR036322 GO:0005515
Cla01g00199 1060 Pfam WD domain, G-beta repeat 920 952 IPR001680 GO:0005515
Cla01g00199 1060 Pfam WD domain, G-beta repeat 830 868 IPR001680 GO:0005515
Cla01g00199 1060 Gene3D - 719 1060 IPR015943 GO:0005515
Cla01g00199 1060 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 954 - -
Cla01g00199 1060 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 954 IPR001680 GO:0005515
Cla01g00199 1060 Coils Coil 594 614 - -
Cla01g00199 1060 Gene3D Transferase(Phosphotransferase) domain 1 289 562 - -
Cla01g00199 1060 PANTHER PROTEIN SPA1-RELATED 2 4 1060 IPR044630 GO:0009640
Cla01g00199 1060 SMART serkin_6 182 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00199 1060 SMART WD40_4 914 952 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 1019 1058 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 963 1002 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 787 825 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 871 910 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 828 868 IPR001680 GO:0005515
Cla01g00199 1060 SMART WD40_4 731 775 IPR001680 GO:0005515
Cla01g00199 1060 ProSiteProfiles Protein kinase domain profile. 131 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00199 1060 ProSiteProfiles Trp-Asp (WD) repeats profile. 810 834 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00199 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1997.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00199 Cla-Chr1:1980313 Cla11g01762 Cla-Chr11:31231858 1.58E-12 dispersed
Cla01g00199 Cla-Chr1:1980313 Cla02g00493 Cla-Chr2:4880642 2.52E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00199 Cla_Chr01 FPKM 7.692785 7.937176 3.317103 3.928738 6.043375 6.04363 6.323395 8.487928 10.188287 9.965629