Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00200 ATGGAACAATTCCGGCGCATTGGAGAGGTATTGGGAAGCTTAAAGGCTCTTATGGTGTTGCAAGATGATATTCAATTCAACCAGCGTCAATGTTGTTTACTCCATGATATGTTTAGTTTGGCTTTTGATACAATTGCTGGAGAGATTAGGGATAATCTGAAGCTTGAAGAGAAGAACACCAAGTGGAAAGCTCTTGAACAGCCTTTGAGGGAATTGCATAGAGTTTTTAAAGAAGGGGAGCTTTACATTAAGCAATGCATAGATTCCAAAGACTGGTGGGCTAAAGTAATCAGCTTCCATCAGAATAAAGACTGCATTGAATTCCATGTCCACAACTTGCTTTCCGGCTTTCCTGCTGTCATTGAAGCAATTGAGACGGCTGGAGAGATATCAGGACTTGATCAGGACGAGATGCAGAAGAGGAGGCTTGTACTTATGAGGAAATATGATATGGAATGGAATGACCTGAAACTGTTCCATTGGAGATTTGGGAAACAGTATTTGGTTCCTCGAGAGATACGTAACCGGATGCAAAGCATTTCGAGAGAAGATCGATGGCTGCTAGTTGAAGCACTCAAGGAGAAGATAAGTTCACCTGGAACAGCTGGTTCAAAGAATGAGCAGCAGCTTGGTGAATTGTTGATAAAGAAATTAAACAACTCGGAACCATCGACTGCAAAGCTTTTCCCGAGTTCGATTTTATTCGGAACAAAGGATTATCAGGTGAGGAGACGGTTGGATGGAGGGCAGTATAAGGAAATCCAATGGTTTGGGGAGAACTTTGGCTTGAGACAGTTCACGGCGGAAACTGAACAAACTGATTCTGAGGTTCCAATTCTTCTATCACTTTCCCATCCTAATATATTGCAATACCTCTGTGGGTTTTTGGATGAGGAGAAGAAAGAGTACTTTCTTATAACAGAGTTGATGTCCAAGGATCTTTCTTCCTACATGAAGGATAATAATGGAGCCAGGAGGAGAATCTTGTTTCCTCTCCATGTTTCAGTTGATATCATGCTTCAAATTGCTAGAGGCATGGAATATCTTCACTCCCAAATGATCTATCATGGAGATTTAAACCCTTCCAATGTATTTATGAAACCAAGGAACTCTTCAGAAGGCTCTTATCTTGTAAAAGTCGCCGGTTTTGGTTTATCGTCGATCAAGAATTCACCTCCCAGAAACTCAACGAGCCAAATGGAAACCAACCCTTTTATCTGGCATGCCCCAGAAGTGATGGCAGAGCAAGAACAACAAGGTCCAGGAACTGTTCCTTTTCTCAGGAAGACAGAGAAAGCAGATGTTTACAGTTTTGGAATGCTTTGTTTTGAGCTTTTGACTGGAAAGGTTCCATTTGAAGATGGTCATTTACAAGGTGAGAAGATGAGCCGCAATATCCGAGCAGGAGAGAGACCTCTCTTCCCATTTCCGACTCCCAAATATTTGGTGAGCCTTACCAAAAGATGTTGGCATTCTGACCCTTCTCAGAGGTTATCTTTCTCTTCCATTTGTCGAATCCTTCGCCAGGTGAAGAAATTCCTCGCGATGAACCCTGAAAGCAATCAGCCCGAACTGCAAATGCCTACCGTCGATTACTGCGACGTTGAAGCAGGAGTTGCAAGGAAGTTCTCCTCAGATGGGGTTGGTGATTTGTGTTCAGTTTCACAAATTCCATTCCAAATGTTTGCTTATAGACTTGCAGAGAAGGAGAAGACAAGTCCAAGCAAATTCAAGACTTGGGATTCTGCAAGTGATGTGGTTTCCATTAGCAAGGATGATTGTGCATCCATTTATAGAGATGACACAGCTTCTGTAATAGAAGATCCATTCACCATCCCTGCAAGTGACACTAGATCCCTCTATTCTGATATGAGATCTGTCTATTCTGAAGCTCCACCCAAGAAAATGCCAACTACAAAGAAACTTCCAGACACAAAGATCAAAAAAGGCACAGGCATCGTAGAAAAAAAAACACGAGTGATTTCACGAACACCTTCACGAACGCCTTCACGACCTCGAGTATTGAAGACGAATAGAGATATCCCATTACCATTTTCTAGCCCTCTGAGTAAGGGAAGAAGGCGACCAACTGGTCATGTCTCGGACTCGGAGATTCACTAG 2121 42.57 MEQFRRIGEVLGSLKALMVLQDDIQFNQRQCCLLHDMFSLAFDTIAGEIRDNLKLEEKNTKWKALEQPLRELHRVFKEGELYIKQCIDSKDWWAKVISFHQNKDCIEFHVHNLLSGFPAVIEAIETAGEISGLDQDEMQKRRLVLMRKYDMEWNDLKLFHWRFGKQYLVPREIRNRMQSISREDRWLLVEALKEKISSPGTAGSKNEQQLGELLIKKLNNSEPSTAKLFPSSILFGTKDYQVRRRLDGGQYKEIQWFGENFGLRQFTAETEQTDSEVPILLSLSHPNILQYLCGFLDEEKKEYFLITELMSKDLSSYMKDNNGARRRILFPLHVSVDIMLQIARGMEYLHSQMIYHGDLNPSNVFMKPRNSSEGSYLVKVAGFGLSSIKNSPPRNSTSQMETNPFIWHAPEVMAEQEQQGPGTVPFLRKTEKADVYSFGMLCFELLTGKVPFEDGHLQGEKMSRNIRAGERPLFPFPTPKYLVSLTKRCWHSDPSQRLSFSSICRILRQVKKFLAMNPESNQPELQMPTVDYCDVEAGVARKFSSDGVGDLCSVSQIPFQMFAYRLAEKEKTSPSKFKTWDSASDVVSISKDDCASIYRDDTASVIEDPFTIPASDTRSLYSDMRSVYSEAPPKKMPTTKKLPDTKIKKGTGIVEKKTRVISRTPSRTPSRPRVLKTNRDIPLPFSSPLSKGRRRPTGHVSDSEIH 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1988980 1991187 - ClCG01G002040.1 Cla01g00200 263789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00200 706 Pfam Protein of unknown function (DUF1221) 21 236 IPR010632 -
Cla01g00200 706 Pfam Protein tyrosine and serine/threonine kinase 269 506 IPR001245 GO:0004672|GO:0006468
Cla01g00200 706 MobiDBLite consensus disorder prediction 660 706 - -
Cla01g00200 706 PANTHER BNAA09G12080D PROTEIN 1 653 - -
Cla01g00200 706 PANTHER SERINE-THREONINE PROTEIN KINASE 1 653 - -
Cla01g00200 706 SUPERFAMILY Protein kinase-like (PK-like) 233 528 IPR011009 -
Cla01g00200 706 ProSiteProfiles Protein kinase domain profile. 240 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00200 706 Gene3D Transferase(Phosphotransferase) domain 1 230 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00200 - - - csv:101209943 1323.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00200 Cla-Chr1:1988980 Cla05g00127 Cla-Chr5:1208568 0 dispersed
Cla01g00200 Cla-Chr1:1988980 Cla01g01294 Cla-Chr1:26249281 1.87E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g104 . . . . . . . Bma14g00625 . . Cma02g01397 Cma15g01268 Car02g01176 Car15g01143 . . Cpe05g00377 . . . . . . . . . . . . . . Cone8ag0256 . Cone6ag0836 . . Csa05g00217 Chy09g01282 . . Blo19g00360 . . . Bpe11g00643 . . . Cmo02g01432 Cmo15g01338 Cma06g01032 . . . . Cpe13g00120 Bhi12g00163 . . Lac11g2016 Hepe06g1491 . . Cla01g00200 Cam01g0206 Cec01g0200 Cco01g0205 Clacu01g0202 Cmu01g0198 Cre09g2309 Lsi09g00188 . . Cme09g01827
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007279 0 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80227 PF07714 PK_Tyr_Ser-Thr 1.80E-38 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00200 Cla_Chr01 FPKM 59.308689 62.808823 11.923458 12.363065 9.999791 9.829647 9.637382 9.309089 10.451142 9.197629