Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00204 ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGCAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTTTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA 960 51.88 MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2013203 2014162 - ClCG01G002080.2 Cla01g00204 263793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00204 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Cla01g00204 319 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 10 315 - -
Cla01g00204 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Cla01g00204 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Cla01g00204 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Cla01g00204 319 MobiDBLite consensus disorder prediction 93 117 - -
Cla01g00204 319 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Cla01g00204 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 315 - -
Cla01g00204 319 MobiDBLite consensus disorder prediction 93 108 - -
Cla01g00204 319 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Cla01g00204 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Cla01g00204 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00204 Cla-Chr1:2013203 Cla05g00123 Cla-Chr5:1186039 1.92E-42 dispersed
Cla01g00063 Cla-Chr1:532902 Cla01g00204 Cla-Chr1:2013203 1.67E-46 wgd
Cla01g00204 Cla-Chr1:2013203 Cla05g00941 Cla-Chr5:9344005 1.15E-63 wgd
Cla01g00204 Cla-Chr1:2013203 Cla07g01408 Cla-Chr7:31275367 2.17E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60343 PF00847 AP2 1.20E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00204 - - csv:101210444 545.043