Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00204 | ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGCAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTTTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA | 960 | 51.88 | MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2013203 | 2014162 | - | ClCG01G002080.2 | Cla01g00204 | 263793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00204 | 319 | Gene3D | AP2/ERF domain | 115 | 175 | IPR036955 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED | 10 | 315 | - | - | |
Cla01g00204 | 319 | PRINTS | Ethylene responsive element binding protein signature | 117 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | PRINTS | Ethylene responsive element binding protein signature | 139 | 155 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | SUPERFAMILY | DNA-binding domain | 116 | 174 | IPR016177 | GO:0003677 | |
Cla01g00204 | 319 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
Cla01g00204 | 319 | SMART | rav1_2 | 116 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 10 | 315 | - | - | |
Cla01g00204 | 319 | MobiDBLite | consensus disorder prediction | 93 | 108 | - | - | |
Cla01g00204 | 319 | CDD | AP2 | 115 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | Pfam | AP2 domain | 116 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g00204 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 116 | 173 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00204 | Cla-Chr1:2013203 | Cla05g00123 | Cla-Chr5:1186039 | 1.92E-42 | dispersed | |
Cla01g00063 | Cla-Chr1:532902 | Cla01g00204 | Cla-Chr1:2013203 | 1.67E-46 | wgd | |
Cla01g00204 | Cla-Chr1:2013203 | Cla05g00941 | Cla-Chr5:9344005 | 1.15E-63 | wgd | |
Cla01g00204 | Cla-Chr1:2013203 | Cla07g01408 | Cla-Chr7:31275367 | 2.17E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60343 | PF00847 | AP2 | 1.20E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00204 | - | - | csv:101210444 | 545.043 |