Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00212 ATGGCGGAAAATCACGACCACGAGCATGAGCACGAGGAGCCCAAAGGTGAGTCGTTGCTTGACAAGATTACCGAGAAGATTCACGCTCATGATTCGTCTTCTTCCGATTCGGATGATGACAAGGGTGACACTTCTGCTTCTATCAAATCTAAGATTTATCGCCTCTTCGGTAGGGAAAGGCCCGTCCACAAGGTTTTCGGCGGGGGAAAACCGGCTGATATCTTCCTGTGGAGAGACAAAAAGGTATCCGGTGGAGTTCTAGGAGGAGCAACAGTTGCATGGATTTTGTTTGAGTTGCTTGAATATCACTTTCTGACTTTGATTTGCCACATTTTTATGGCTGCTCTAGCAGTGGTGTTTTTGTGGTCAAATGCTTCCTTCTTCATTAACAAGTCTCTGCCGCATATCCCTCAAGTTCACATTCCAGAGGAGCCAGTTAAAGAGATTGCCACTGCGTTGAGAGTTGAGATCAATAGGGCCATTGCAATCTTGAGAGAAATTGCTTCAGGAAGGGATCTGAAGAGCTTTCTTTACGCTATTGCTGGTTTGTGGGTTCTGTCCATTGTGGGAAGCTGGTTCAACTTCCTAACCTTACTATATATTGGAGTTATTTTGCTCTTCACCGTACCCGTGTTCTACGAGAAATACGATGACAAGGTGGACGCCTTTGCAGAGAAGGCGATGGCCGAAATCAAGAAACAGTATGTAGTATTTGATGCAAAGGTGCTTTCTAAAATCCCAAGAGGACCACTGAAGGACAAAAAGATTGCTTGA 774 45.09 MAENHDHEHEHEEPKGESLLDKITEKIHAHDSSSSDSDDDKGDTSASIKSKIYRLFGRERPVHKVFGGGKPADIFLWRDKKVSGGVLGGATVAWILFELLEYHFLTLICHIFMAALAVVFLWSNASFFINKSLPHIPQVHIPEEPVKEIATALRVEINRAIAILREIASGRDLKSFLYAIAGLWVLSIVGSWFNFLTLLYIGVILLFTVPVFYEKYDDKVDAFAEKAMAEIKKQYVVFDAKVLSKIPRGPLKDKKIA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2149664 2151615 - ClCG01G002190.1 Cla01g00212 263801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00212 257 PANTHER RETICULON 8 256 IPR045064 GO:0009617
Cla01g00212 257 MobiDBLite consensus disorder prediction 1 20 - -
Cla01g00212 257 ProSiteProfiles Reticulon domain profile. 71 257 IPR003388 -
Cla01g00212 257 PANTHER RETICULON-LIKE PROTEIN 8 256 - -
Cla01g00212 257 Pfam Reticulon 72 227 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00212 - - - csv:101212804 474.937
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00212 Cla05g00931 CCT
Cla01g00212 Cla05g00931 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00212 Cla-Chr1:2149664 Cla05g02276 Cla-Chr5:34404743 4.65E-24 dispersed
Cla04g01073 Cla-Chr4:25886104 Cla01g00212 Cla-Chr1:2149664 2.68E-70 transposed
Cla05g00779 Cla-Chr5:7475858 Cla01g00212 Cla-Chr1:2149664 1.48E-10 transposed
Cla05g01098 Cla-Chr5:11375502 Cla01g00212 Cla-Chr1:2149664 2.49E-50 transposed
Cla07g01027 Cla-Chr7:26690513 Cla01g00212 Cla-Chr1:2149664 2.71E-76 transposed
Cla10g02063 Cla-Chr10:36327120 Cla01g00212 Cla-Chr1:2149664 1.51E-40 transposed
Cla11g00547 Cla-Chr11:6209650 Cla01g00212 Cla-Chr1:2149664 7.43E-38 transposed
Cla01g00212 Cla-Chr1:2149664 Cla05g00134 Cla-Chr5:1257602 3.09E-88 wgd
Cla01g00212 Cla-Chr1:2149664 Cla05g00931 Cla-Chr5:9212795 7.13E-103 wgd
Cla01g00212 Cla-Chr1:2149664 Cla06g00314 Cla-Chr6:4040723 2.34E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
Vvi16g805 . . . . . . . . Cmo16g00092 Cmo18g01314 . . . . Sed02g1696 . Cpe14g00072 Bhi01g01424 Tan01g0175 Cmetu06g0839 . Hepe07g0108 Mch10g0110 . Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Cone1ag1201 . . . Lsi05g01177 Csa05g00229 Chy09g01271 . . . . . . Bpe12g00371 . . . . . Cma16g00088 Cma18g01285 Car16g00078 Car18g01204 Cpe09g00055 . . . . . . . . Cla05g00931 Cam05g1018 Cec05g1022 Cco05g1018 Clacu05g1007 Cmu05g0960 Cre05g1041 . Csa03g02171 Chy06g01283 Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00212 Cla_Chr01 FPKM 17.77327 18.187626 18.006721 19.381416 18.870422 21.047897 19.286062 23.740086 22.062454 21.730495