Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00219 ATGACAGGACAACAATGGAAAAATATTGCTTTAGCTTGTGTTTTTGTTTTGTTAACTTTTAAGGCTTATTCATTGCCTCTTTCAACAAATGGAAGATGGATCATTGACGTTACAACTGGCCAATGCATGAAGTTGATGTGTGTAAATTGGCCGGGACACATGCAAGCTATGTTGGTAGAGGGTCTTCATCTCAGACCACTTGATGATATTGCATCCTCGGTGGCAAAGTTGAGGTTTAATTGTGTGCGTTTGACATACTCAATCCACATGTTCACACGCTATGCCAATTGGACTGTTCAACAATCCTTTGAGAATTTTGATTTGAAAGAAGCCATGGTAGGCATAGCCCAAAACAATCCTTCTTTATTGAACATGACGCTAGTTCAAGCTTATGAAGCAGTGGTTGATTCACTTGCTGCACATGGAATTATGATAGTTTCTGATAATCATATAAGCCAGCCAAGATGGTGTTGTAGTGATGATGATAGCAATGGCTTCTTTGGAGACCGCTATTTTGATCCTCAAGAATGGCTACAAGGAATCAATTTGGCAGCTCAAAGCCTAAAAAACAAACCCCAAGTGGTAGCAATAAGTCTGAGAAATGAACCACGAGGACCAAATCAAAACGTGGAGATATGGTTTCAATACATGAGCCGAGGAGCTAAGCTTGTTCACCAAATTAACCCAAATGCTTTAGTAGTGGTTTCTGGATTGAGCTATGATACCGATCTAAGCTTCTTGAAGGACAAGTCGATGGGCTTCAATTTGGATAATAAGCTTGTATTTGAGGCTCATTTGTACTCCTTCACAAACAACATGGGCGATTATTGGATGTCAAAGCCATTAAACACATTTTGTACTAATGTCAACCAAGGATTTGAAGATCGAGCTGGGTTTCTTGCAAGAGGACAAAACCCGATGCCAATCTTTGTGAGTGAGCTTGGGATCGACCAAACAGGTGCAAATGAGGGTCAAAATCGATTCCTAAGTTGCTTCTTTACTTATCTTACTGAGAATGATTTTGATTGGGGCCTATGGGCGTTGCAAGGTAGCTATTATTATAGGGAAGGTGTGAAAAATGCTGAGGAAACCTTTGGCGTCTTAGATTCAAATTTTGCAAATGTCAAAAATCCGAAATTCCTTCAGAGGTTTCAGCTTATGCAAACCAAACTTCAAGGATCTATATTGTGCTTGAAAGCTGTTGGAGATGGACTCCCTCCAATTCTTTCTAAAGACTGCTCAAGCCAACAAAATGCATGGAAATATGCTTCAAATGCCAAGCTTCAACTAGCCACTACAGATGAACAAGGACAAACCTTATGTTTGCAAAAGGCTTCACATTCGCATCAAATTTTGACTAACAAGTGCATATGTCCGAATGATTCCGAATGCCAAGGAGATCCACAAAGCCAATGGTTTACACTTGTCCCATCAAATGTACATCTCAATTAA 1452 39.88 MTGQQWKNIALACVFVLLTFKAYSLPLSTNGRWIIDVTTGQCMKLMCVNWPGHMQAMLVEGLHLRPLDDIASSVAKLRFNCVRLTYSIHMFTRYANWTVQQSFENFDLKEAMVGIAQNNPSLLNMTLVQAYEAVVDSLAAHGIMIVSDNHISQPRWCCSDDDSNGFFGDRYFDPQEWLQGINLAAQSLKNKPQVVAISLRNEPRGPNQNVEIWFQYMSRGAKLVHQINPNALVVVSGLSYDTDLSFLKDKSMGFNLDNKLVFEAHLYSFTNNMGDYWMSKPLNTFCTNVNQGFEDRAGFLARGQNPMPIFVSELGIDQTGANEGQNRFLSCFFTYLTENDFDWGLWALQGSYYYREGVKNAEETFGVLDSNFANVKNPKFLQRFQLMQTKLQGSILCLKAVGDGLPPILSKDCSSQQNAWKYASNAKLQLATTDEQGQTLCLQKASHSHQILTNKCICPNDSECQGDPQSQWFTLVPSNVHLN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2189284 2192264 - ClCG01G002247.1 Cla01g00219 263808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00219 483 SUPERFAMILY (Trans)glycosidases 26 375 IPR017853 -
Cla01g00219 483 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 391 477 - -
Cla01g00219 483 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 8 392 - -
Cla01g00219 483 Pfam Cellulase (glycosyl hydrolase family 5) 66 349 IPR001547 GO:0004553|GO:0071704
Cla01g00219 483 Gene3D Glycosidases 25 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00219 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:105435091 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00214 Cla-Chr1:2168142 Cla01g00219 Cla-Chr1:2189284 1.76E-11 dispersed
Cla01g00219 Cla-Chr1:2189284 Cla01g00517 Cla-Chr1:5599809 0 dispersed
Cla01g00218 Cla-Chr1:2186261 Cla01g00219 Cla-Chr1:2189284 2.84E-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g56 . . . . . . . . . . Cma02g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01268 . . . . . . . . . . Cmo02g01450 . . . . . . . Bhi12g00177 . . . . . Lcy12g1599 Cla01g00219 Cam01g0226 Cec01g0217 Cco01g0227 Clacu01g0221 Cmu01g0214 Cre09g2295 Lsi09g00206 . . Cme09g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00219 Cla_Chr01 FPKM 10.448598 12.019423 17.024157 14.06917 15.724531 14.51202 12.972491 35.084408 36.141338 32.572723