Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00223 ATGGTGGAAGACAGCCAGAGCTTTCCATTAGCGCACTACCAAGCTCACCACAAATCCGACCAAGAACAACAACTCGCCACTTTCAAAACTCTCCGAAAAGAACGATCCAACAAATGTTTCATCTACATCTTCTCCGCCTTCGTCTTCCTCAGCGTCGCTGTTCTAATCTTCGCTCTCATCGTCCTCCGCCTCAATTCCCCTTCCATCCGCCTCTCTTCCGTCTCAATCCCTAAGTTTTCCATTACTAACGCCAATTCCTCTTCTCCTTCGCTTAATCTCACCTTAATCGCCGAATTCACCGTCGATAATTCCAACTTCGGTCCTTTCGATTTCGACAACGGCACCGTGGGTCTCATGTATGGCAGCGCCATCATCGGTGAGAGGAGTACCGGCGCTGGAAGAGCCGAGGCCAAGGGGAGTATGAGGATGAATGTTACTGTGGAAGCTTCGGCGAAGAATATCAGCGGTGATTCGAATAATTTGGGGATTTTGAATCTGAGTAGCTTTGCGAAACTGAGAGGCAGAGTTCGTTTGATTCATATTTTTAGGAGGAGGATTTCGTCGGAGGTTAGCTGTTCTATGAATCTCGATTTGAATACTCATCAAATTCAGCATAATTGGGTTTGTGAGTAG 633 47.08 MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVLRLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNLGILNLSSFAKLRGRVRLIHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2216262 2216894 - ClCG01G002280.1 Cla01g00223 263812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00223 210 Pfam Late embryogenesis abundant protein 99 192 IPR004864 -
Cla01g00223 210 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 7 210 - -
Cla01g00223 210 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 7 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00223 - - - csv:101212642 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00221 Cla-Chr1:2205139 Cla01g00223 Cla-Chr1:2216262 1.33E-25 dispersed
Cla01g00223 Cla-Chr1:2216262 Cla06g00315 Cla-Chr6:4049130 1.36E-23 dispersed
Cla01g00222 Cla-Chr1:2212764 Cla01g00223 Cla-Chr1:2216262 6.25E-23 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g803 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00223 Cam01g0230 Cec01g0221 Cco01g0231 Clacu01g0225 Cmu01g0218 Cre09g2292 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00611 . . Lac11g0134 . . Lcy12g0114 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006399 1 1 3 1 1 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 0 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00223 Cla_Chr01 FPKM 16.168943 16.422739 11.990744 11.330745 15.876674 18.05097 17.925539 6.108971 6.608318 7.106833