Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00228 ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCTAGGACTCGTCCAGTTCCCCCACCAGATCAGGAGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTATAAAGATACCCCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 1740 46.15 MGSMLGDCRHMTLTTSANSDPLILQLLPRTRPVPPPDQEATKRTQKLQNSSRMEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAASSILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2289237 2298455 + ClCG01G002330.2 Cla01g00228 263817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00228 579 Gene3D - 70 216 IPR036388 -
Cla01g00228 579 MobiDBLite consensus disorder prediction 29 53 - -
Cla01g00228 579 PRINTS DNA topoisomerase VI subunit A family signature 276 293 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 PRINTS DNA topoisomerase VI subunit A family signature 333 349 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 PRINTS DNA topoisomerase VI subunit A family signature 190 207 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 PRINTS DNA topoisomerase VI subunit A family signature 208 223 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 PRINTS DNA topoisomerase VI subunit A family signature 300 321 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 Pfam Type IIB DNA topoisomerase 148 213 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cla01g00228 579 Gene3D - 218 440 - -
Cla01g00228 579 MobiDBLite consensus disorder prediction 545 579 - -
Cla01g00228 579 CDD TOPRIM_TopoIIB_SPO 274 431 IPR034136 -
Cla01g00228 579 Pfam Det1 complexing ubiquitin ligase 484 549 IPR018276 -
Cla01g00228 579 MobiDBLite consensus disorder prediction 545 566 - -
Cla01g00228 579 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 68 434 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cla01g00228 579 SUPERFAMILY DNA topoisomerase IV, alpha subunit 147 433 IPR036078 GO:0003677|GO:0005694
Cla01g00228 579 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 68 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00228 K10878 SPO11; meiotic recombination protein SPO11 - csv:101213596 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00228 Cla-Chr1:2289237 Cla04g00862 Cla-Chr4:23629118 1.31E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00228 Cla_Chr01 FPKM 0.0 0.0 38.872681 39.43959 0.0 0.0 0.782767 5.807432 6.257528 5.838393