Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00231 ATGTCCCCAGTTCGTAGATTCATGGCTGCATCCAACTCTCTGTCGCTGAAGCACGGCCTCTCTTTCTGCTGCCCGCACTCTGGTTCCATTTCCAGACCTCAACAGCCTTCTTCCGTTGCCTTCAGAGGCTTCCGGAGAAGCTACGTTGCTGCCTCCACGGATTTCGCCAACGATAATAGAGAGTTTGTGATTGTTGGTGGTGGAAATGCTGCTGGTTATGCAGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGGCTTTGTATAGTATCTAAGGAGGCATTTGCGCCGTACGAGCGTCCGGCTCTGACGAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGAACTGGTGGGGAAAGGCAAACTCCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGTATTGATATAAAAAACCAAACCCTTAGAACTACTTCAGGCAAACTGCTCAAGTATGGAGCCCTTTTTATAGCAACAGGATGTACGGCCTCAAGATTTCCAGATAAGATCGGTGGTGAGCTACCTGGTGTTCACTACATCCGAGATGTCGCAGATGCAGATTCACTAATCTCCTCATTGGAGAAAGCTAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATTGGTATGGAGGTCGCTGCAGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAAAGACTTTTTACTCCTTCGCTGGCCAGGAAGTATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCATAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTCGGGTCACTTCTGTTAGACTTGCAGATGGATCTTCCATCGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCTGTCGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAAAAATTCCAGGAATCTTTGCAGTTGGAGATGTGGCAGCATTCCCATTAAAGGTGTATGATCGTGTAGCTCGGGTAGAACATGTGGATCATGCTCGTCGATCGGCCCAGCATTGTGTCAAAGCATTACTAACTGCTCATACTCAAACATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGAAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTTACTCTATCTGGCCCACAGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCTAAGCTCGCAAGGTTCCAGCCTTCGGTTGATAAAGCTAAACTTCAAAATGCGTCTTCAGTTGAGGAAGCACTGGATATTGCCCGAGCATCTTTGCAGCAGGTTGGAGCTGCGGTTTAA 1515 45.68 MSPVRRFMAASNSLSLKHGLSFCCPHSGSISRPQQPSSVAFRGFRRSYVAASTDFANDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGTGGERQTPEWYKDKGIETFYQDPVMGIDIKNQTLRTTSGKLLKYGALFIATGCTASRFPDKIGGELPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFIKGASIKNLEAGANGRVTSVRLADGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTKIPGIFAVGDVAAFPLKVYDRVARVEHVDHARRSAQHCVKALLTAHTQTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGYSIWPTGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQNASSVEEALDIARASLQQVGAAV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2327120 2334098 - ClCG01G002370.1 Cla01g00231 263820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00231 504 SUPERFAMILY FAD/NAD(P)-binding domain 61 403 IPR036188 -
Cla01g00231 504 Gene3D - 395 489 IPR016156 GO:0016491|GO:0050660
Cla01g00231 504 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Cla01g00231 504 PRINTS FAD-dependent pyridine nucleotide reductase signature 304 320 - -
Cla01g00231 504 PRINTS FAD-dependent pyridine nucleotide reductase signature 171 189 - -
Cla01g00231 504 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cla01g00231 504 PRINTS FAD-dependent pyridine nucleotide reductase signature 330 352 - -
Cla01g00231 504 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 319 - -
Cla01g00231 504 PRINTS Pyridine nucleotide disulphide reductase class-I signature 345 352 - -
Cla01g00231 504 PRINTS Pyridine nucleotide disulphide reductase class-I signature 61 83 - -
Cla01g00231 504 PRINTS Pyridine nucleotide disulphide reductase class-I signature 217 242 - -
Cla01g00231 504 Gene3D - 63 378 IPR036188 -
Cla01g00231 504 PANTHER APOPTOSIS-INDUCING FACTOR 1 10 499 - -
Cla01g00231 504 Gene3D - 185 312 IPR036188 -
Cla01g00231 504 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 10 499 - -
Cla01g00231 504 Pfam Pyridine nucleotide-disulphide oxidoreductase 62 375 IPR023753 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00231 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 923.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00231 Cla-Chr1:2327120 Cla10g00611 Cla-Chr10:9098720 4.04E-115 dispersed
Cla01g00231 Cla-Chr1:2327120 Cla10g01822 Cla-Chr10:34106827 2.67E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00231 Cla_Chr01 FPKM 3.761006 3.043722 5.751371 6.918055 10.358633 11.323164 9.678295 10.219825 8.739203 10.259687