Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00234 ATGGCTACTAAAGAATCGAGTTCTACCACTCCCACTGAAGGCAAGATTAAAGGGGTTCTTACCCATGGTGGCCGATATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTCCCTCCTTTGCGACCTATTGGTAGAGGTGCTTATGGTCTTGTTTGTTGTTTTCTGAAAATGATGAATGGAGTAAGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCCAAGAGAACATTGAGAGAAATTAAGCTTCTTCGCCACATGGAACATGAAAATATTATCGCTATCAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACAGACGATCATTGCCAGCAGTACTTTTTGTATCAGTTGTTGCGTGGGCTGAAATATGTACATTCAGCCAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACAACTTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAGTTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATCGATGTTTGGTCTGTGGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTTATAACTGAGGTACAATTCTCTAGATCATTTGTCTGTGGGCAATGCTTTAGACTGCTACTAGGATCACCAGATGATGCAAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATACGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACGTGTCTCCAGCTGCCCTGGATCTTCTCGAAAAGATGCTCGTATTTGATCCGAACAAACGCATTACAGTGGAGGAGGCACTATGTCATCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCGGTCTGTGCCAGGCCTTTCAATTTTGATTTTGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATTTGGAAAGAATCCGTCAGGTTCAATCCTGACGAATCCGCTAGGAGGACAACTCTTTGTGTTTGA 1230 42.6 MATKESSSTTPTEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCCFLKMMNGVSAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLRHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITEVQFSRSFVCGQCFRLLLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNVSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2370951 2375937 + ClCG01G002400.2 Cla01g00234 263823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00234 409 ProSitePatterns MAP kinase signature. 88 192 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cla01g00234 409 CDD STKc_TEY_MAPK 36 398 - -
Cla01g00234 409 Gene3D Transferase(Phosphotransferase) domain 1 137 382 - -
Cla01g00234 409 ProSitePatterns Protein kinases ATP-binding region signature. 49 82 IPR017441 GO:0005524
Cla01g00234 409 SUPERFAMILY Protein kinase-like (PK-like) 46 363 IPR011009 -
Cla01g00234 409 Pfam Protein kinase domain 48 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00234 409 ProSiteProfiles Protein kinase domain profile. 43 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00234 409 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 400 - -
Cla01g00234 409 SMART serkin_6 43 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00234 409 Gene3D Phosphorylase Kinase; domain 1 26 392 - -
Cla01g00234 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Cla01g00234 409 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 2 18 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00234 Cla-Chr1:2370951 Cla03g00202 Cla-Chr3:2273884 0 dispersed
Cla07g00825 Cla-Chr7:22897719 Cla01g00234 Cla-Chr1:2370951 1.79E-139 transposed
Cla01g00234 Cla-Chr1:2370951 Cla06g00323 Cla-Chr6:4131335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80229 PF00069 Pkinase 4.60E-65 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00234 - - csv:101214254 751.51