Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00235 ATGGCGACGGTGATTTCGGCCGTTGCAACCGCCGCGCCGTACCGGTTTAATCACCGGAGATTGTTTCAACGGCCTGCCGGAGCTCCGCCTCCACGGCTGGGTTTTCCGAAGCGTTTTCCATGGCGGTGTTTTGCGAAACAGAGCTCGAGAAGATTGCTGGCCATGAAGAAGAAGAAAAGTGAAGAAAATGAAGTGGTTAAGGAATTGAAGATGACTGTGCAGGAAAAAATGGCGACGAAGAAAGCGGAAAGAAATGCTTATTTGGTAGCAGCAATTGTTTCGAGCTTTGGGATCACTTCGATGGCCGCCATCGCTGTTTATTACAGATTCTCTTGGCAAATGGAGGGCAAAGAGTTTCCAATTTTGGAAATGTTCGGTACTTTTGCACTATCCATCGGCGCTGCTGTGGGAATGGAATTCTGGGCGAGATGGGCTCACAAAAAGCTATGGCATGCTTCGTTATGGGATATGCACGAGTCTCATCATAGGGCGAGGGTTGGAGCTTTTGAATTGAACGATGTGTTTGCAATTATAAACGCTGTCCCAGCCATTGCTCTTCTTTCTTTTGGCTTCTTCAATCAAGGCTTCTTTCCCGGCCTCTGTTTTGGTGCCGGTTTGGGAATTACGGTGTTTGGGATGGCCTACATGTTCGTCCACGATGGCCTCGTGCACCGTCGTTTCCCTGTGGGTCCTATAGCCGCTGTCCCCTACTTACGACGTGTCGCTGCTGCCCATCATATCCATCACACGGATAAATTCGACGGAGTTCCGTATGGTTTGTTTTTAGGACCCAAGGAATTGGAGGAAGTGGATGGCGAGGAAGAGCTGCAGAAGGAAATTAAAAAGAGAAGCAAGCAACTTCGATTCGCGCCAATCTCAACACTGGACCGGCGACGATTGCAGAATATCGGAATTGAACCAATAATATCTGCTCCTGTGATATTGAACTGA 951 48.69 MATVISAVATAAPYRFNHRRLFQRPAGAPPPRLGFPKRFPWRCFAKQSSRRLLAMKKKKSEENEVVKELKMTVQEKMATKKAERNAYLVAAIVSSFGITSMAAIAVYYRFSWQMEGKEFPILEMFGTFALSIGAAVGMEFWARWAHKKLWHASLWDMHESHHRARVGAFELNDVFAIINAVPAIALLSFGFFNQGFFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIAAVPYLRRVAAAHHIHHTDKFDGVPYGLFLGPKELEEVDGEEELQKEIKKRSKQLRFAPISTLDRRRLQNIGIEPIISAPVILN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2378718 2386915 + ClCG01G002410.2 Cla01g00235 263824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00235 316 PANTHER HYDROXYLASE, PUTATIVE, EXPRESSED-RELATED 54 286 - -
Cla01g00235 316 Pfam Fatty acid hydroxylase 134 261 IPR006694 GO:0005506|GO:0008610|GO:0016491
Cla01g00235 316 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 54 286 IPR045019 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00235 Cla05g00912 CCT
Cla01g00235 Cla05g00912 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00235 Cla-Chr1:2378718 Cla05g00912 Cla-Chr5:9041158 5.79E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00235 K15746 - csv:101214325 466.848