Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00239 AAGCCCATTTTGGACAGATTTATCCCTTTTTGCATTGACCCATTAAAGAGAGAAAGAAGCTCAGACCATTGCAGAGCAGAAGAGAGAGAATTGATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAACCAGATCCAAACCGGGTTCGGTTCCACCACCGAACACGCGACGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGCAAATGTTTCTTTCGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATCGACGGTCATCGATCAATCGTGGCACGACTCGAGGATCAGAAACCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCTTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAATAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCAGCTGGGGGGAATGGCAACGGAGGGGTGAGCATCGCCTTCTCTCCGGCAGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGA 1905 45.93 KPILDRFIPFCIDPLKRERSSDHCRAEERELMAGELCEGGEKSNEMVVGGGFFYNSNSNSNNIPNQFTNQIQTGFGSTTEHATEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQANVSFVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVARLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNNNNQHFNNGNGGGVSLTLGLQQHAAAGGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2404412 2409333 - ClCG01G002450.1 Cla01g00239 263828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00239 635 SMART HOX_1 342 411 IPR001356 GO:0003677
Cla01g00239 635 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 579 - -
Cla01g00239 635 SMART prehox3 167 291 IPR006563 -
Cla01g00239 635 Gene3D - 345 412 - -
Cla01g00239 635 SUPERFAMILY Homeodomain-like 343 413 IPR009057 -
Cla01g00239 635 Pfam Homeobox KN domain 359 403 IPR008422 GO:0003677|GO:0006355
Cla01g00239 635 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 36 579 - -
Cla01g00239 635 ProSiteProfiles 'Homeobox' domain profile. 339 407 IPR001356 GO:0003677
Cla01g00239 635 Coils Coil 414 434 - -
Cla01g00239 635 CDD homeodomain 342 408 IPR001356 GO:0003677
Cla01g00239 635 Pfam Associated with HOX 173 289 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00239 Cla-Chr1:2404412 Cla01g01594 Cla-Chr1:30651707 5.93E-84 dispersed
Cla01g00239 Cla-Chr1:2404412 Cla02g01273 Cla-Chr2:26728274 2.21E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00239 - - cmo:103482774 957.977