Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla01g00245 | ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG | 534 | 55.62 | MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2467004 | 2467537 | + | ClCG01G002500.1 | Cla01g00245 | 263834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla01g00245 | 177 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 144 | - | - | |
| Cla01g00245 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Cla01g00245 | 177 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270 | |
| Cla01g00245 | 177 | CDD | RING-H2 | 91 | 134 | - | - | |
| Cla01g00245 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Cla01g00245 | 177 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Cla01g00245 | 177 | PANTHER | - | 1 | 144 | - | - | |
| Cla01g00245 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Cla01g00245 | 177 | SUPERFAMILY | RING/U-box | 72 | 140 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00245 | Cla-Chr1:2467004 | Cla08g00174 | Cla-Chr8:3527262 | 2.13E-13 | dispersed | |
| Cla01g01864 | Cla-Chr1:33489739 | Cla01g00245 | Cla-Chr1:2467004 | 3.02E-16 | transposed | |
| Cla02g01065 | Cla-Chr2:22265318 | Cla01g00245 | Cla-Chr1:2467004 | 8.78E-15 | transposed | |
| Cla01g00245 | Cla-Chr1:2467004 | Cla05g00155 | Cla-Chr5:1438105 | 2.30E-41 | wgd | |
| Cla01g00245 | Cla-Chr1:2467004 | Cla06g00326 | Cla-Chr6:4181289 | 8.40E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla01g00245 | K16281 | - | csv:101215533 | 300.056 |