Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00245 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.62 MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2467004 2467537 + ClCG01G002500.1 Cla01g00245 263834
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00245 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 144 - -
Cla01g00245 177 Pfam Ring finger domain 90 134 IPR001841 -
Cla01g00245 177 SMART ringv_2 90 134 IPR011016 GO:0008270
Cla01g00245 177 CDD RING-H2 91 134 - -
Cla01g00245 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Cla01g00245 177 SMART ring_2 91 133 IPR001841 -
Cla01g00245 177 PANTHER - 1 144 - -
Cla01g00245 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cla01g00245 177 SUPERFAMILY RING/U-box 72 140 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00245 Cla-Chr1:2467004 Cla08g00174 Cla-Chr8:3527262 2.13E-13 dispersed
Cla01g01864 Cla-Chr1:33489739 Cla01g00245 Cla-Chr1:2467004 3.02E-16 transposed
Cla02g01065 Cla-Chr2:22265318 Cla01g00245 Cla-Chr1:2467004 8.78E-15 transposed
Cla01g00245 Cla-Chr1:2467004 Cla05g00155 Cla-Chr5:1438105 2.30E-41 wgd
Cla01g00245 Cla-Chr1:2467004 Cla06g00326 Cla-Chr6:4181289 8.40E-50 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00245 K16281 - csv:101215533 300.056