Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00249 ATGGGAGGTTGCTGCTGCTGTTCTTCAAAAAGAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGTACTCCCCCAGCATTTTCAACCGGGCTTTTAGTTGACACGAATCTTGATACATCAATCCCAGACACTTATAGATCACCTCCTTTGCCTATGCCATATGATGTTGTTTTAACAAATCCACATATTTCATCCGTGGCTCAAGAAATTGGCAGCAATAAGAATGATGCTGCAGCTCAGACAACAAATCCCGATACGATTCAAGAAGCAGCATGCATAAATACTCGGGAAACTTCAACCAAATTTGAAGGCATCAATGAATCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATTGAACTTTCAAAAGGTGTAGAATCTGTGGTCTTACCTATCGAAGAAGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTTACCACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGCGATCAGGAAATGGTTTTTAGCTCTCCAATTGATTAG 639 40.53 MGGCCCCSSKRTESNIAPGYYYYPRASEEHVPLSSPLSTPPAFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTNPHISSVAQEIGSNKNDAAAQTTNPDTIQEAACINTRETSTKFEGINESDCKKHTDFEVDTLKESEIELSKGVESVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSSPID 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2527795 2529422 + ClCG01G002540.2 Cla01g00249 263838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00249 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Cla01g00249 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Cla01g00249 212 SMART ring_2 161 201 IPR001841 -
Cla01g00249 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 208 IPR013083 -
Cla01g00249 212 Pfam Ring finger domain 160 201 IPR001841 -
Cla01g00249 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Cla01g00249 212 SUPERFAMILY RING/U-box 155 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00249 - - - cmos:111435815 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00249 Cla-Chr1:2527795 Cla05g00961 Cla-Chr5:9603694 6.07E-09 dispersed
Cla03g01194 Cla-Chr3:25230351 Cla01g00249 Cla-Chr1:2527795 2.34E-12 transposed
Cla06g00552 Cla-Chr6:6735276 Cla01g00249 Cla-Chr1:2527795 1.32E-11 transposed
Cla10g01720 Cla-Chr10:32988877 Cla01g00249 Cla-Chr1:2527795 1.66E-12 transposed
Cla11g00466 Cla-Chr11:5306900 Cla01g00249 Cla-Chr1:2527795 5.89E-25 transposed
Cla01g00249 Cla-Chr1:2527795 Cla05g00158 Cla-Chr5:1460651 1.14E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00249 Cla_Chr01 FPKM 16.141975 22.364237 8.317077 8.129147 7.205992 11.488076 9.136642 60.600624 65.660286 57.817825