Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00252 ATGGCCCGGTTGATTCTACCATGCAAGAGCGTGGGATTGGCAAGGAATAACCTCTTGGGTTTGGTTTCATCTGCTCCTGTGATTACCCATTTCCCAGTTCGAGCTGCACACCGTTGTGCTAATTCAATTGGAACTTCAGTCAAACGTAGCACTAGACAGAGGCCTTTATTTACTTCACAGGTGAAATCTGGATTGAATTATCGCTTTCCATATCGTTTGCCATTTGGGGCTAAACAAGCTAGTAGGAAACTGATTTGTTCAGTTGCAACCGAAGCATTGCAAGAAAAAGCTGAAGAAAACAAAATGGGTACACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTTGACACGGTCGATTTGAAATTTTTGTTGGGTGAGGAGAAAACAATTGTCAATTCAAGAATAACAGTGTTCCCTAGAGTTGAAGGATCTAAATTTCCTCTGGTTTTGAATGGTGATGATGTGCAGTTGATTTCAATCAAGATTAACAGTGAGGACCTCAAGGAGGAAGATTACGTTCTGGACTCCCGCCATTTGACAATCCTATCACCGCCAACTGGTTCTTTTACTTTGGAAATTGTCAATGAGATATGTCCTCAGAACAACACATCTTTAGAGGGACTTTATAAATCAACTGGAAATTTCTGCACACAATGTGAAGCTGAAGGTTTCCGGAAGATCACATTTTACCAGGACCGTCCAGATATAATGGCAAAGTACACATGTCGCATAGAAGCCGATAAGTCACTGTACCCAGTGCTGCTGTCTAATGGAAATCTTATAGATCAGGGTGATTTAGAGGGTGGAAAACATTATGCCCTTTGGGAGGATCCCTTTAAGAAACCCTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTGGTTAGCAGAGACGATGTTTTTATTACTCGTTCGGGTAGGAAAATCTCCTTGAAGATATGGACTCCAGCTGAAGACTTACCCAAGACTGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTCTTTGGATTAGAATATGATCTGGATCTCTTCAACATTGTGGCTGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTCTGAATATTTTCAATTCAAAACTTGTCTTGGCATCTCCGGAGACTGCTTCTGATGCAGATTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGTCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGCCTTACTGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGTCGTGCTGTGAAAAGAATTGCTGATGTTTCAAGACTTAGGAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCAGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAAATATGATCTGACACGGGTCCTGTACCAACTTGAACATGCAGTGACGGTCTACGAGAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTTGAGAGACATGATGGTCAAGCTGTTACCTGTGAAGATTTCTATGCCGCAATGCGAGATGCAAATGATGCCGATTTTGCTAACTTCTTATTATGGTACTCTCAAGCTGGGACCCCTCAAGTCAAAGTTACATCTTCTTACAATTCTGATGGTCGTACGTTCTCTCTGAAGTTCAGGCAAGATGTTCCACCAACTCCTGGGCAGCCAGTTAAAGAGCCAATGTTTCTACCTGTCGCTCTTGGTTTGTTAGACTCATCTGGTAATAATTTGCGTCTTTCCTCCATATATCACGATGGGGTGTTGCAGTCTATATCTGAAAACGATCAGCCAGTCTACTCTACAGTCCTCAGGCTGACTAAGAAAGAAGAAGAGTTTGTCTTCTCGGATATACCTGAGCGGCCAGTTCCTTCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGTCTGGAAACAGATCTAAACAACGATGATCTATTTTTCCTTCTTGCCAATGATTCCGATGAGTTCAACCGTTGGGAGGCGGGACAAGTGCTGGCACGGAAACTGATGCTCCAACTGGTGGCTGATCACCAACAAAATAAGACATTGGTTCTTAACTCGAAGTTTGTTGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCCAAAGCAATAACTCTTCCTGGCGAAGGGGAAATAATGGACATGATGGAGGTTGCAGATCCTGATGCTGTTTATGCCGTTCGAAGTTTCATTAGGAAGCAACTGGCCACTGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAATAGGAGTTCAGAAGCATATGTGTTTAACCATCCTGAAATGGCCAGGCGTGCTTTGAAGAATACTGCTCTTGCATATCTTGCATTAGTTGAGGATGCAGAGATTGCTAGCCTTGTGCTTAATGAGTATAAGAATGCCTCAAATATGACTGACCAATTCGCAGCTTTGGTGGCTATAGCTCAGAAGCCAGGTGAAACTCGTGATGAGATTCTTGCCGACTTCTATGCCAAGTGGCAGCATGACTATTTGGTTGTCAATAAATGGCTTGCTCTTCAAGCCATGTCAGATATTCCTGGTAACATTGAGAATGTCCAGAACCTCCTAAATCACAAGGCGTTCGACTTGCGAAATCCAAACAAGGTATATTCTTTGATTGGAGGTTTCTGTGGATCAATCGTCAACTTTCACGCAAAGGACGGATCGGGCTACAAATTCTTGGGAGACATTGTCCTGCAACTAGACAAAATTAATCCCCAGGTTGCCTCTCGAATGGTCTCTGCCTTCTCGAGATGGAGGCGTTATGACGAACACCGGCAAAATCTTGCCAAGGCACAACTGGAGAAGATATTGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 3012 43.09 MARLILPCKSVGLARNNLLGLVSSAPVITHFPVRAAHRCANSIGTSVKRSTRQRPLFTSQVKSGLNYRFPYRLPFGAKQASRKLICSVATEALQEKAEENKMGTPKEIFLKDYKMPDYYFDTVDLKFLLGEEKTIVNSRITVFPRVEGSKFPLVLNGDDVQLISIKINSEDLKEEDYVLDSRHLTILSPPTGSFTLEIVNEICPQNNTSLEGLYKSTGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHYALWEDPFKKPCYLFALVAGKLVSRDDVFITRSGRKISLKIWTPAEDLPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKYDLTRVLYQLEHAVTVYEKGAEVVRMYKTLLGSQGFRKGMDLYFERHDGQAVTCEDFYAAMRDANDADFANFLLWYSQAGTPQVKVTSSYNSDGRTFSLKFRQDVPPTPGQPVKEPMFLPVALGLLDSSGNNLRLSSIYHDGVLQSISENDQPVYSTVLRLTKKEEEFVFSDIPERPVPSLFRGYSAPVRLETDLNNDDLFFLLANDSDEFNRWEAGQVLARKLMLQLVADHQQNKTLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVYAVRSFIRKQLATALKAELLTAVENNRSSEAYVFNHPEMARRALKNTALAYLALVEDAEIASLVLNEYKNASNMTDQFAALVAIAQKPGETRDEILADFYAKWQHDYLVVNKWLALQAMSDIPGNIENVQNLLNHKAFDLRNPNKVYSLIGGFCGSIVNFHAKDGSGYKFLGDIVLQLDKINPQVASRMVSAFSRWRRYDEHRQNLAKAQLEKILSANGLSENVFEIASKSLAA 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2565353 2573711 + ClCG01G002580.2 Cla01g00252 263841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00252 1003 CDD M1_APN 112 560 - -
Cla01g00252 1003 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 308 569 - -
Cla01g00252 1003 Pfam Peptidase family M1 domain 332 555 IPR014782 GO:0008237|GO:0008270
Cla01g00252 1003 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 107 296 IPR042097 -
Cla01g00252 1003 TIGRFAM pepN_proteo: aminopeptidase N 112 1001 IPR012779 GO:0008270
Cla01g00252 1003 Pfam Peptidase M1 N-terminal domain 134 290 IPR045357 -
Cla01g00252 1003 Gene3D - 679 1002 IPR037144 -
Cla01g00252 1003 Pfam Domain of unknown function (DUF3458_C) ARM repeats 681 1002 IPR024601 -
Cla01g00252 1003 PANTHER BNAC06G01820D PROTEIN 68 1003 - -
Cla01g00252 1003 Gene3D - 563 676 IPR038438 -
Cla01g00252 1003 PANTHER - 68 1003 IPR012779 GO:0008270
Cla01g00252 1003 Gene3D tricorn interacting facor f3 domain 115 298 IPR042097 -
Cla01g00252 1003 Gene3D - 300 383 - -
Cla01g00252 1003 Pfam Domain of unknown function (DUF3458) Ig-like fold 563 677 IPR035414 -
Cla01g00252 1003 Gene3D Neutral Protease Domain 2 384 562 IPR027268 -
Cla01g00252 1003 PRINTS Membrane alanyl dipeptidase (M1) family signature 398 413 IPR001930 GO:0006508
Cla01g00252 1003 PRINTS Membrane alanyl dipeptidase (M1) family signature 417 429 IPR001930 GO:0006508
Cla01g00252 1003 PRINTS Membrane alanyl dipeptidase (M1) family signature 280 295 IPR001930 GO:0006508
Cla01g00252 1003 PRINTS Membrane alanyl dipeptidase (M1) family signature 362 372 IPR001930 GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00252 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - csv:101216008 1755.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00252 Cla-Chr1:2565353 Cla07g01316 Cla-Chr7:30342848 1.89E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00252 Cla_Chr01 FPKM 11.479127 14.085872 13.693094 13.062411 14.134819 12.424341 13.133962 14.894113 13.001939 13.136105