Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00254 ATGGATGGTATGGTGGTGGCCGTGGTAGCTGCGGCGGTGGTGACGTACATGATTTGGTTTTTGAATATCAAACGGTCGTTGAGTGGTCCACGTATCTGGCCATTATTGGGCAGTCTTCCAGGTTTGATTGAGAATAGTCATCGTATGCATGATTGGATTGCAGAGAATTTGCGGTCAACGGGTGGCACGTACCAGACTTGTACGTGTGCCATTCCGTTTCTGACAAAAAAGCAAGGTTTGGTGACGGTCACATGCGACCCGAAGAACTTGGAGTATATTTTGAAGACACAATTCGAGAATTACCCAAAAGGGCCTAATTGGCAGGATGTGTTTCATGATTTGCTTGGTGATGGAATCTTCAATTCTGATGGTAATACATGGTTGTTCCAGCGTAAGACTGCTGCACTGGAATTTACTACTAGGACCCTTCGCCAAGCCATGGCTCGTTGGGTTAGTCGAGCTATTAAGTCTCGCTTTTGCCCAATTCTTGAGTCAGCTCAATGTCAGGCCAACTCAGTTGATCTCCAAGACCTTCTACTTCGACTCACATTCGATAATATTTGTGGGTTGACTTTTGGCAAGGATCCGCAGACTCTCGCTCCTGAATTGCCCCACAACAGCTTTGCTATGGCTTTTGATCGAGCCACGGAAGCCACACTGTGTCGCTTTATTTTGCCTAGCTTTATATGGAAGCTAAAGAGATGGCTTCGGCTCGGGATGGAGGTGACCTTAACCCAAAGCCTCCACCATACAAATCAATACCTAACCAATATCATCGAGACACGTAAGCTCGAGTTGTCCAATCACCACCAGGTCAACAGTAGCCAAACCCCTCACGACGACTTGCTATCCAGATTCATGAAAAAGAAGGAATCCTATTCAGACACATTCCTCCAACACGTGGCACTCAACTTCATCCTAGCTGGCCGAGACACATCATCCGTCGCCCTCAGCTGGTTCTTCTGGCTAGTCATCAAAAACCCAAGAGTAGAGGAAAAAATCCTCACAGAAATCTGCACCGTCCTGTTGGAGACACGTGGCAAAGAGATATCCACGTGGACGGAAGAGCCATTGGAATTTGAAGAAGTGGATCGATTAATTTATCTCAAAGCCGCCATATCCGAAACTCTCCGACTCTACCCATCGGTGCCGGAAGATTCAAAACACGTAATAAACGACGACGTTTTACCCACCGGAACTTTCGTCCCCGCCAGCTCCTCCGTTACATATTCAATATATTCCATTGGTCGAATGAAATTCATTTGGGGAGAAGATTGTTTAGAATTCAAACCAGAGAGATGGTTGGTTACAAATGAAAACAAAATTGAGCTTCAAAATGCTTATAAATTTGTAGCCTTTAATGCCGGCCCAAGAATTTGTTTAGGAAAAGAATTGGCTTATCTACAAATAAAGTCGATTGCGGCCGCGGTCTTGCTCCGCCATCGCCTGACTTTAGTCGCCGGCCACCGTGTTGAGCAAAAGATGTCCTTGACGTTGTTCATGAAGTATGGTCTCAAAGTTCACTTGCATCCCAGAGATTTGGGGCTAGTGGTGGAGAAAATTAGCAAGAACACGGCGGAGACGGCGGCTGTGGCGGCGGATTGA 1605 46.48 MDGMVVAVVAAAVVTYMIWFLNIKRSLSGPRIWPLLGSLPGLIENSHRMHDWIAENLRSTGGTYQTCTCAIPFLTKKQGLVTVTCDPKNLEYILKTQFENYPKGPNWQDVFHDLLGDGIFNSDGNTWLFQRKTAALEFTTRTLRQAMARWVSRAIKSRFCPILESAQCQANSVDLQDLLLRLTFDNICGLTFGKDPQTLAPELPHNSFAMAFDRATEATLCRFILPSFIWKLKRWLRLGMEVTLTQSLHHTNQYLTNIIETRKLELSNHHQVNSSQTPHDDLLSRFMKKKESYSDTFLQHVALNFILAGRDTSSVALSWFFWLVIKNPRVEEKILTEICTVLLETRGKEISTWTEEPLEFEEVDRLIYLKAAISETLRLYPSVPEDSKHVINDDVLPTGTFVPASSSVTYSIYSIGRMKFIWGEDCLEFKPERWLVTNENKIELQNAYKFVAFNAGPRICLGKELAYLQIKSIAAAVLLRHRLTLVAGHRVEQKMSLTLFMKYGLKVHLHPRDLGLVVEKISKNTAETAAVAAD 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2583198 2584802 + ClCG01G002600.1 Cla01g00254 263843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00254 534 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PANTHER CYTOCHROME P450 6 514 - -
Cla01g00254 534 PANTHER CYTOCHROME P450 86A7 6 514 - -
Cla01g00254 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cla01g00254 534 SUPERFAMILY Cytochrome P450 20 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 Pfam Cytochrome P450 29 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 Gene3D Cytochrome P450 22 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla01g00254 534 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00254 Cla-Chr1:2583198 Cla09g00419 Cla-Chr9:3995408 2.73E-160 dispersed
Cla03g00084 Cla-Chr3:890944 Cla01g00254 Cla-Chr1:2583198 0 transposed
Cla01g00254 Cla-Chr1:2583198 Cla06g00341 Cla-Chr6:4336709 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00254 K15398 - csv:101216733 955.666