Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00255 ATGGAGGGGAAAGAAGAGGACGTGAAACTAGGAGCAAACAAGTTCTCAGAAAGGCAGCCAATCGGCACATCGGCGCAGACGGACAAGGACTATAAAGAGCCACCGCCGGCGCCGCTGTACGAGCCCGGCGAACTGACTTCATGGTCATTTTACAGAGCCGGAATCGCGGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACCATCTTGACAGTGATGGGAGTCAGCCGAGCTCCGTCGAAATGCTCCACCGTTGGCATTCAGGGTATCGCTTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGTGGACACATTAATCCGGCGGTGACGTTCGGGCTTTTCCTGGCCAGGAAATTGTCCCTCACCAGAGCCATATTCTACATCGTAATGCAGTGCCTTGGTGCCATCTGCGGCGCGGGCGTCGTGAAGGGCTTCGAGGGCTCCACCTACGTGCAGAAGCTCGGTGGTGCAAACTTCGTCGCCTCTGGCTACACCAAGGGCAGCGGTCTCGGTGCTGAGATTGTCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGATGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCCATTACCGGCACCGGCATTAATCCGGCCAGGAGTCTCGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCACTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTTTGGCTGCTATTTACCACCAAATCATCATCAGAGCTATTCCATTCAAGGCCAGGGCTTGA 861 55.28 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGSTYVQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2586172 2589248 - ClCG01G002610.1 Cla01g00255 263844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00255 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cla01g00255 286 MobiDBLite consensus disorder prediction 1 36 - -
Cla01g00255 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Cla01g00255 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cla01g00255 286 TIGRFAM MIP: MIP family channel proteins 56 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 285 - -
Cla01g00255 286 CDD MIP 52 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g00255 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00255 Cla-Chr1:2586172 Cla07g00381 Cla-Chr7:4593508 1.43E-171 dispersed
Cla01g00255 Cla-Chr1:2586172 Cla07g00380 Cla-Chr7:4586834 1.49E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00255 K09872 - csv:101217440 560.451