Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00256 ATGGCTTCAACTTTCACTTTCCGTCCATTTCCTCTCATTCTCTCTCCTCGCCCCAATTTTCCTTCTCTAAGACCTCAATTTCACCGCCAATATCTTCCCACCATTCGAATTCTTCGACCTTCAATTCCTTCCGCCATTGGTCCGGACGGCAAATTCTATCCGGACCCGGCCGACGACGACCCGCCGGAAGCCCCGGAAGATTCTGGCCATGGAGTTTCAAAGTTTCAGCAGATATACCGCCAGGCGGCTCGTGCGAGGAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACATATCTTTCGGCCATTGCTGACGTTGAGGATGCTCCTGAGAATGCAGAGTATTTGAATTCGGAGAGCTCAGGCGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTTAAGCCTAACCCGAAGAAAGAAAAGGCGATTGAGAAAGATGATCTTGAGGGCATTGATGAGTTGGAGACTGAGGAGGTCGCGGACTTGGAGGAGATTAACGAACTTCGGGGGCTTACAGTGATTTCGGAGGACGAGGACGAGGATGAAAATGGGCCTAGGAATTTGGATGACAATGTAAGTGAATTAGGTGGTCAGGATGAACTATCTTCTTTTAATTCTTTTGATATGGATTTTGATAGCTATGGAAAAGTCAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCCGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGATTCGAGGATGGTTAGCGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAACTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCTTCAAAGAATATGGCCGTGATAGGAATAACTGGGACAGACGGTAAAACGAGCACTTCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCAAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCAAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGTGGCAGGTGTGATGAAGTTGATTTTGATATAGCGGTTTTCACAAATTTGACTAGAGACCATTTGGATTTTGAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACACCGAAAAGTTATTAACATCGATGATCCCAGTGCACCATTCTTCATAGATCAAGGAAACCCAGATGTGCCTGTTGTCACCTTTGCAATGGAAAACAAAAATGCTGATGTCCACCCCCTGAAATATGAATTGTCATTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGTATATTGGAGATATCATCGGGGTTGCTTGGAAAGCACAATATATACAATATTCTTGCAGCAGTGGCAGTTGGGATCGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAGGTTGATGCTGTTCCTGGGAGATTCGAGCTGATTGATGAGGAGCAGGCATTTGGTGTAATTGTTGATCACGCTCATACTCCTGATGGTCTATCCCGGCTGCTCGATTCTGTTAGGGAGCTTGGCCCGAGGCGGATTATCACTGGTACATTTTCCAGTCCTAATTTAGCTTCAGACATCTCGGGGAAAAGACCCATGATGACAAAGATTGCAACTGATAAAAGCGATGTTACTATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGAGAAAATGATTACTACCCGCCTCTCTCAAATGGTCATAGAATTTTCCTGCATGATATCAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGCGAGGAAGGCGACGTGGTTGTGAGTTACTGTATCCCCTCCCTTTTGTGGTTGCCGGCAAGGGACATGAAACATATCAAATTGAAGGTGATAAAACAGAGTTTTTTGATGATAGAGAAGAATGCAGAGAAGCACTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGCCATCCTAATCTGTTTTGAGCTTTTCGTCTCTCTGGTACCAAGGAACATTTTCATGACTGAAAGAAGAGTAGAAGTGTTTCTCTGTCATGGTCGTTCACAACGGTTCAGGAACTATAAAATGCACACAATTAAGGCAAATACTAGTCATTTTGTTTCTAATTGTGCTCTTTTGCTTGTTTTCTTTTGGTATACAGGTTCCAGTGATTTATCTACAAGGGGCACTTTAAGGACCGTTGGATTTGGTTGGTCAGATTGGGGGAATAATGTACTCCTACTCCATATGTCTTCGCAGTTGCTTTGGTCGCCTTGGTTGGATACGCAGCAACGGGGCATGATTTTGAAAATTGAATGTGTGATGGAGGGAAGTAATGTAAATTTAGGAAGATGGGAACTTGCACCGACGTTTGCCATAACCACATGGCTGCAGAGGCATTTTCTTGGTGGGTTTGCCATATCCGCTCTAGTTTTGCTGCTGATTTTTCCTTGTCACGTGACTGCTGGGGATATAGTTCACCATGACGATTTGACTCCTAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGGTTGATGGCAAAGAAGCTAGTGAATTTGTCGGTGTCGGTGCAAGATTTGGTGCTACAATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTTGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTAGATCGTGGTCACTGCAAATTTACTACAAAAGCAAATATTGCAGAAGCTGCAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGAACAAGCTTGGAGAAGATGCTTATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCAGTACGATCTTGTGCTCATCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCCATTGAGCAGGACAAGCTGCTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATGGGCAGCCCTGGTGTTGTATATATTAACATGGCATCAGCAGTCTTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATTGAGCTTTTGGTAGTTCTTTTCTGCATAGGAGGTGCAGAGGGTTTGCAAACTTGTTTGGTTGCGTTATTGTCAAGATGCTTTAAGCAAGTTGGAGAATCATACATCAAGGTGCCATGCTTTGGAGCTGTTTCATACCTCACTGTTGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCTGTTTATCGGAATGTGTCATTTGCCTGGATCGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCAAATCTCAAGGTTGGAACAGTGCTACTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGACGGAATCCCAATGTTGCTAAAGATTCCTCGCATGTTTGATCCCTGGGGTGGTTATAGCATTATTGGATTTGGTGACATCCTTTTACCTGGACTCGTAGTAGCATTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGGTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATTACTTATGTGGCTTTGAACCTGATGGATGGCCATGGCCAGCCCGCACTGCTTTACATCGTCCCGTTCACTCTCGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGGTCTGCCCTCATGCTCATCTTCTCATCAATGACGATTTAAATGAAGAAAAATGA 4362 44.22 MASTFTFRPFPLILSPRPNFPSLRPQFHRQYLPTIRILRPSIPSAIGPDGKFYPDPADDDPPEAPEDSGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKAIEKDDLEGIDELETEEVADLEEINELRGLTVISEDEDEDENGPRNLDDNVSELGGQDELSSFNSFDMDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVSAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFEGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPSAPFFIDQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITGTFSSPNLASDISGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVSYCIPSLLWLPARDMKHIKLKVIKQSFLMIEKNAEKHCNMLMNFTKLELTQVNFHGAILICFELFVSLVPRNIFMTERRVEVFLCHGRSQRFRNYKMHTIKANTSHFVSNCALLLVFFWYTGSSDLSTRGTLRTVGFGWSDWGNNVLLLHMSSQLLWSPWLDTQQRGMILKIECVMEGSNVNLGRWELAPTFAITTWLQRHFLGGFAISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWVDGKEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVSTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDMGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKQVGESYIKVPCFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRVGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERVCPHAHLLINDDLNEEK 1453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2598063 2610990 - ClCG01G002620.2 Cla01g00256 263845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00256 1453 MobiDBLite consensus disorder prediction 185 206 - -
Cla01g00256 1453 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 242 790 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cla01g00256 1453 PANTHER SIGNAL PEPTIDE PEPTIDASE 931 1448 IPR007369 GO:0004190|GO:0016021
Cla01g00256 1453 Gene3D - 243 343 - -
Cla01g00256 1453 Gene3D - 977 1096 - -
Cla01g00256 1453 MobiDBLite consensus disorder prediction 53 67 - -
Cla01g00256 1453 Gene3D - 345 583 IPR036565 GO:0005524|GO:0009058
Cla01g00256 1453 MobiDBLite consensus disorder prediction 48 72 - -
Cla01g00256 1453 Pfam Mur ligase middle domain 354 559 IPR013221 GO:0005524|GO:0009058|GO:0016881
Cla01g00256 1453 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 931 1448 - -
Cla01g00256 1453 SUPERFAMILY MurE/MurF N-terminal domain 242 345 IPR035911 -
Cla01g00256 1453 Pfam Mur ligase family, glutamate ligase domain 580 666 IPR004101 GO:0009058|GO:0016881
Cla01g00256 1453 SMART psh_8 1155 1422 IPR006639 GO:0004190|GO:0016021
Cla01g00256 1453 Pfam Mur ligase family, catalytic domain 265 342 IPR000713 GO:0009058|GO:0016881
Cla01g00256 1453 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 580 725 IPR036615 GO:0009058|GO:0016881
Cla01g00256 1453 SUPERFAMILY MurD-like peptide ligases, catalytic domain 345 577 IPR036565 GO:0005524|GO:0009058
Cla01g00256 1453 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 264 725 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Cla01g00256 1453 Gene3D - 585 729 IPR036615 GO:0009058|GO:0016881
Cla01g00256 1453 Pfam Signal peptide peptidase 1157 1433 IPR007369 GO:0004190|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00256 - - - csv:101217207 1332.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00256 Cla05g00889 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00256 Cla-Chr1:2598063 Cla08g00393 Cla-Chr8:10463058 8.85E-30 dispersed
Cla01g00256 Cla-Chr1:2598063 Cla05g00889 Cla-Chr5:8773639 1.63E-22 wgd
Cla01g00256 Cla-Chr1:2598063 Cla06g00343 Cla-Chr6:4353734 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00256 Cla_Chr01 FPKM 101.911598 101.893433 125.714546 127.074844 41.187214 41.755718 41.393986 144.79158 150.13382 158.511795