Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00257 ATGGGAACAAAGCATATGCAATCTAATTCTAGCATGGTTGGAAGAGTCTCAAAAAGCCACAAAATGCTGTGCAAAGCTGTTGATAGACCTAGCAAAGAACTTCAACAGCCATCTCCTAGAAGTTTGGTGACTGCATCATCAAAGAATCTAGATTCAACAGCATCAACAAGAGTAGCTTGCTGCAGAAGTCGAAGATTTTGTACTTGTAAAAGTTGTATGGAGTATGGCCGACATAATGAGATTAGCCTAAGATTGGTTCAGAAGAATGAAGCGGCTGAGCCATTTTCAAGTAAAAAGTTTGTTGGTGTGGCTGATAAACAGTGTAAACAATTATTAGATGCATTGGGAATTTTCAATTCAAATAAGGAATTGTTTGTAAATCTACTACAAGACCCAAATTCTCTGTTAATTAAACGTATTGAAGACTCTACTGATTCAAGGAACAGAAAACAGCAGATGATGACTTTCTTTGATAGTAGGTTGTCTGGAAACAAGATAAGAGAAGTGGGGGAATATGAGGAGCCTGACTACAGTAAAAAATTGAAGCCCTGTGATAGATTACCCACTGAGGATAGCGATGATTCTCTATCCTTGGAAAGAATAGTGGTATTAAAGCCAAATCCAACTGTCTCACTACCTGCGGCTGTGGGAACCAATCATTGCCCCTCTCTGAAATCTCATTCTAGTTTCATAAAGAATGGGCAAAGTGACAAGAGAACTCTTTTTTCTTTTAGACAAATAAAGAGGAAGATGAACCAAGCAATGAGGACAGGGAAAAAAGAACCCGAATGCCTATCAACTAATGGTATCGCCAAGAAAACTCCACCAGTTTTTAGGGCCCCAAAAGATGATGGTAAACAGATGGTTATGGAGGCAACTGGAAGAAGTTCCTACAATAATATTCAAACAGATGATAAAATAATTCCTAGTTCATTTCAAGATTCCCTGGAAAGGGATCAACTAGACAGGGCATTTTACTCTAGAAATGGGGACAAGACGGCTTCAACCAGTGAAAGTACTGACAAAAAGGTAGGCCAGTCAGCTGTGACAAGTAATCTCAAACGGCAGAAATCTAAGAAGCATGAAGGGGACAAAGAGGTCTCAAGAAAAATTAAAGCAAAACCATGGGGGTGGGCGATGTGCTTTTCTGATGATGACATATTGCCATCAAATAAACCTGGATGTCATACTCCAAGCCATACGAGATATTCCCACCTTAGCAATAAGAAGTTCATTTACGAGAAGAAGTCAAAATCTCAGAATGACGTGGAACAAAGTTGCAAAACACCAGAAATGGTTAAAATAGGAGCTCCTTTTGCAGAGGCAAGGAGAGATGATGACCAATTGCACGCCTCAACTACAGAGTTGAATGTGTCACCCGTCATTTTTTCTGATGTCAAAGTGGATCAAGATCCAATTATTGAAGGGTCTGTGAAGTTCGTAAACGACATTGCCACAATACACCAGGAAAGAAATAGTTTTTGTGAAGAGTCATCTAGATTTGATAACAATTGCAACACATGTTATTGTCAAAGAACCAACAAGACCAAGGGCTTTGAAGAGAAAGGAAATCCAGAGCTCTCTAAACTGAATTTGCCTTTGGAGGTTCAACCATCAGCTCTTTCAGTAGATCCATTTCCATCCAGCTCATTACAATTTCAGACAGTGGAAGATCCTAATGGTTTGTGTGATAGAGAAGTGCAGCCTCTACCAGAAACTATTCATGACGACCAACTTTTGATAGATGCTACCTCTAGTAATCTTGCTTTCACCCCAGGAACAGCTGAGCCATCTAGTGAAGCACTCCCCATTAATTTTGAAAAGGACCAGTGTACTGGTTTGGCAAGGTTGCAACAGGTTCTCAATCCCGCCATCGCTTCCTTTAACTGTTGTAGCTCCATCTCTCAGTGTGTACTTGAGCTGCTGCAAGTCTCAAAACAGAATTGGAATGAATTGTCATTGGATTGTCATTCTTCAACTTGGCTGCAGATATCATTTGTTGACAAAGTGAAGATATTTAGTAGCCAGTTATGTGGTGATTGTGTGCTTCTTTTCGACTATTTTAATGAAGTCCTTGAGGATGTTTTCCACTGTTATATTAGATGCTCCCCATGGTTATCATCTTATAAGGCACACATTCAAGCACCTGATAAGGAAAGCGCTTTCTATCACGAGGTTATCCAACATGTGGATTGGTCACTTCTGCAGCAGCAGCCACCACAAACACTGGACCAACTTTGTTTAAGAGACTTGAGATCTAGAAAGTGGATCAATTATCCAACTGAAACTGAAGAGCTCGTTACCATTGTAGCGGAATCGGTTTTAAGAGAATTAATCATTGAAAGTGTTGTTTACCTTGGTGTAGATGCTCTCACACAACTCCAAATGTTGTCTGAAGATGAACAGTTGGAACTCAACACACAGCTGAAACAACTCAACAAACCTGCAATCAAGAGTTTCAAGACAGAATTTGGTGATATTATAGATTGTGTTGACATCTACAAACAACCTTCTCTTGATCATCCTTTGCTCAAAAACCATGCAATCCAGATGAAGCCAACAACAATCCCGAAAGGGCTGATAGGCGATACATCAAAAGTCGAGAGGCTGCTGCAGGATCTTCCAAACATTAACAGCTGCCCACCAGGATCAGTGCCAATCAGAAGGACTACAAGGGAAGATCTGATAGCAGCAAGAAGTTTCAAGCCTTTGTGGTCAGATCAAGCAACAGATAATCTCCGGCCAAGCACTACGATCGACGCCGCCGGTTATCAGCTTGCAACACTCAACTATAGGGCCAAAGTCTATGGAGCAAAATCACAAATCAATGTATGGAACCCAATTCCATCAGTGGATCAATATAGTTCTGCTAGTATGTGGCTATCTCAAGGCTTTAGAGATCAACAGAACACCATACAAGTTGGTTGGGGAGATGCGAGCACGGGGAACTGGTTGTTCATGCTTGGAGACAAATACATTGGGTACTGGCCAAAGGGACTGCTGCCAGGCTTGGAAAATGGAGCAACTACTGCAGCATGGGGAGGGGAAATTTACAGCCCTACAACAGAAGCAGGGCCAGCCATGGGGAGTAGCCATTTTCCTGAAGAGGGTTTCAGTAAAAGTGCTTTTGTGAATCAGATTCAAGTGGCAGAGTCTAGTATTTCAAGGGGATTTGTTGATCCAGTGGGTTCACAGCTCAGTATTGTTTTGGACAAACCTATCTGTTTTGGGCTCATTAATAAGTTTACTGAAGATGGGAACTGGGGACATCATATCTTCTTTGGAGGGCCAAGTGGCTGCAGGTGA 3306 41.38 MGTKHMQSNSSMVGRVSKSHKMLCKAVDRPSKELQQPSPRSLVTASSKNLDSTASTRVACCRSRRFCTCKSCMEYGRHNEISLRLVQKNEAAEPFSSKKFVGVADKQCKQLLDALGIFNSNKELFVNLLQDPNSLLIKRIEDSTDSRNRKQQMMTFFDSRLSGNKIREVGEYEEPDYSKKLKPCDRLPTEDSDDSLSLERIVVLKPNPTVSLPAAVGTNHCPSLKSHSSFIKNGQSDKRTLFSFRQIKRKMNQAMRTGKKEPECLSTNGIAKKTPPVFRAPKDDGKQMVMEATGRSSYNNIQTDDKIIPSSFQDSLERDQLDRAFYSRNGDKTASTSESTDKKVGQSAVTSNLKRQKSKKHEGDKEVSRKIKAKPWGWAMCFSDDDILPSNKPGCHTPSHTRYSHLSNKKFIYEKKSKSQNDVEQSCKTPEMVKIGAPFAEARRDDDQLHASTTELNVSPVIFSDVKVDQDPIIEGSVKFVNDIATIHQERNSFCEESSRFDNNCNTCYCQRTNKTKGFEEKGNPELSKLNLPLEVQPSALSVDPFPSSSLQFQTVEDPNGLCDREVQPLPETIHDDQLLIDATSSNLAFTPGTAEPSSEALPINFEKDQCTGLARLQQVLNPAIASFNCCSSISQCVLELLQVSKQNWNELSLDCHSSTWLQISFVDKVKIFSSQLCGDCVLLFDYFNEVLEDVFHCYIRCSPWLSSYKAHIQAPDKESAFYHEVIQHVDWSLLQQQPPQTLDQLCLRDLRSRKWINYPTETEELVTIVAESVLRELIIESVVYLGVDALTQLQMLSEDEQLELNTQLKQLNKPAIKSFKTEFGDIIDCVDIYKQPSLDHPLLKNHAIQMKPTTIPKGLIGDTSKVERLLQDLPNINSCPPGSVPIRRTTREDLIAARSFKPLWSDQATDNLRPSTTIDAAGYQLATLNYRAKVYGAKSQINVWNPIPSVDQYSSASMWLSQGFRDQQNTIQVGWGDASTGNWLFMLGDKYIGYWPKGLLPGLENGATTAAWGGEIYSPTTEAGPAMGSSHFPEEGFSKSAFVNQIQVAESSISRGFVDPVGSQLSIVLDKPICFGLINKFTEDGNWGHHIFFGGPSGCR 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2621154 2632051 + ClCG01G002640.2 Cla01g00257 263846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00257 1101 PANTHER DUF3741 FAMILY PROTEIN 3 784 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 355 369 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 293 313 - -
Cla01g00257 1101 Pfam Neprosin activation peptide 819 925 IPR025521 -
Cla01g00257 1101 Pfam Protein of unknown function (DUF3741) 107 134 IPR022212 -
Cla01g00257 1101 Pfam Domain of unknown function (DUF4378) 680 781 IPR025486 -
Cla01g00257 1101 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 3 784 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 325 369 - -
Cla01g00257 1101 Pfam Neprosin 977 1097 IPR004314 -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 34 48 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 329 353 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 28 48 - -
Cla01g00257 1101 MobiDBLite consensus disorder prediction 265 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00257 - - - bhj:120067270 1393.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00257 Cla-Chr1:2621154 Cla09g00325 Cla-Chr9:3171742 2.19E-46 dispersed
Cla01g00257 Cla-Chr1:2621154 Cla05g00167 Cla-Chr5:1555587 2.03E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00276 Chy09g01233 . . . . . . . . . . . . . . . . . . Bhi12g00270 . . Lac11g2084 Hepe06g1539 . Lcy12g1643 Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 Lsi09g00252 . . Cme09g01768
Vvi16g695 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007276 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00257 Cla_Chr01 FPKM 15.612375 18.113794 26.840036 28.647055 14.061187 12.509065 14.285097 49.106247 48.347385 52.847782