Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00258 ATGGACCCCAAAGAAGTCAAGTCCGATTTGGTCTTGATTCTAGACTTTGGTTCGCAATATACCCACCTCATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGCATTTCTGGTACTTCCCCGCTTAAAGCCATCACTGATCTCAACCCACAAGTTGTTATTCTTTCCGGCGGGCCTCACTCTGTCCACGCTCACGACTCGCCGAGTTTCCCTTCTGGGTTCGTCGAGTGGGCGGAGGCGAATGGGGTTTTTGTTTTGGGTGTTTGTTATGGGCTCCAGTTGATTGTGCAGAGGTTGGGGGGTGTGGTGAAGGTTGGGGAGAAACAGGAGTATGGGAGAATGGAGATTGAGGTGGAGAAGGCTAATGCGTTGTATGGGACTAAGAAGGTTGGGGACCGGCAAGTTGTTTGGATGAGCCATGGAGATGAGGTGGCGAAACTTCCTGAGGGTTTTGAAGTGGTGGCAAGGAGTCAACAAGGGTCAGTCGCGGCTGTGGAAAATCACAACAAGAAGTTTTATGGGTTGCAGTATCATCCGGAGGTGACACATTCACCAGAAGGAATGGAGACGTTACGTTATTTTCTCTTTGATGTCTGTGGAATTACTGCCAACTGGAAGATGGAAAATATACTAGATGAAGAAATTAAAGTAATCAAAGAAACTGTGGGTCCAGACGAACATGTCATCTGTGCATTATCAGGAGGTGTGGATTCAACAGTTGCTGCTACTCTTGTTCACAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTTGACAACGGTTTATTGAGGTATAAAGAAAGAGAACGTGTTATGGAAACCTTTGAAAGAGATCTTCATCTGCCTGTTACTTGTGTCGATGCAGTTGACCAATTTCTTAGCAAGCTTAAAGGTGTAACAGATCCTGAGGTTAAAAGAAAAATAATTGGAAAGGAGTTCATTTCTATATTTGATTCATTTGGCCATGAGTTGGAACTTAAAATTGGTAAGAAGCCGTCATACTTGGTCCAAGGCACATTGTATCCTGATGTAATTGAATCTTGTCCACCACCTGGATCTGGAAGAACTCATTCCCACACAATCAAAAGTCATCATAACGTTGGAGGACTCCCTAAGGACATGAAACTGAAACTTATTGAGCCACTTAAACTCCTCTTTAAGGATGAGGTACGCCAACTGGGGAGCATATTGAACGTTCCTGATGCGTTTCTAAAGCGACATCCTTTTCCTGGGCCTGGTCTTGCTGTACGGGTGCTGGGTGACGTAACAGAAGGCAATGCATTGGAAGTTCTTCGCCATGTTGATGAGATTTTTATTCAATCAATCAAAGATGCTGGACTTTATGATTCGATATGGCAGGCATTTGCGGTATTTTTACCCATAAAATCAGTTGGAGTTCAAGGTGATCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGTATAACTTTGAGCACCAATTCCTTGATAATGTGGCAAGAAAAATTTGCAACAGTGTTCGAGGTGTAAACCGGGTTGTTCAAGACATTACATCAAAGCCTCCATCAACAATTGAATGGGAATGA 1605 43.93 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHAHDSPSFPSGFVEWAEANGVFVLGVCYGLQLIVQRLGGVVKVGEKQEYGRMEIEVEKANALYGTKKVGDRQVVWMSHGDEVAKLPEGFEVVARSQQGSVAAVENHNKKFYGLQYHPEVTHSPEGMETLRYFLFDVCGITANWKMENILDEEIKVIKETVGPDEHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDAVDQFLSKLKGVTDPEVKRKIIGKEFISIFDSFGHELELKIGKKPSYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGSILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRHVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWYNFEHQFLDNVARKICNSVRGVNRVVQDITSKPPSTIEWE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2635629 2639471 + ClCG01G002660.1 Cla01g00258 263847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00258 534 Pfam GMP synthase C terminal domain 443 533 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cla01g00258 534 Gene3D - 4 204 IPR029062 -
Cla01g00258 534 TIGRFAM guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 211 534 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cla01g00258 534 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 2 534 - -
Cla01g00258 534 CDD GATase1_GMP_Synthase 11 197 IPR004739 GO:0003922|GO:0005524|GO:0006177
Cla01g00258 534 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 206 - -
Cla01g00258 534 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 8 534 IPR022955 GO:0003922|GO:0006177
Cla01g00258 534 Gene3D HUPs 208 413 IPR014729 -
Cla01g00258 534 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 196 428 - -
Cla01g00258 534 Pfam Glutamine amidotransferase class-I 13 199 IPR017926 -
Cla01g00258 534 SUPERFAMILY Class I glutamine amidotransferase-like 9 237 IPR029062 -
Cla01g00258 534 Gene3D - 414 534 - -
Cla01g00258 534 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 207 408 IPR025777 GO:0003921|GO:0005524
Cla01g00258 534 CDD GMP_synthase_C 229 533 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Cla01g00258 534 Pfam tRNA methyl transferase HUP domain 229 269 - -
Cla01g00258 534 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 413 534 - -
Cla01g00258 534 PANTHER GMP SYNTHASE-RELATED 2 534 - -
Cla01g00258 534 PRINTS Glutamine amidotransferase superfamily signature 55 64 - -
Cla01g00258 534 PRINTS Glutamine amidotransferase superfamily signature 86 97 - -
Cla01g00258 534 PRINTS Glutamine amidotransferase superfamily signature 176 189 - -
Cla01g00258 534 TIGRFAM guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 11 203 IPR004739 GO:0003922|GO:0005524|GO:0006177
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00258 K01951 guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] - csv:101217911 1041.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00925 Cla-Chr10:21958480 Cla01g00258 Cla-Chr1:2635629 2.47E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00258 Cla_Chr01 FPKM 114.128014 134.190308 17.493107 18.748972 0.993136 1.528724 1.18424 0.107542 0.150485 0.280996