Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00260 ATGGCTGAATCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTTTCTGCTCCCCGATATAAATTTGCCACTGGATGCTTCAGATGAGGAATTGAGAGCATGCTTGATCGATGGAACTGTACTATGCAGCATGTTGGATAAACTATGCCCTGGCGCAGTTCAGGGAGGCAATTCTAAGCCCATCGTTCCTAATATTGAGAGTTTTCTAATAACTCTGGATGAATTAGCACTTCCTGGATTTGAACCTTCTGCCTTAGAGCAGGGATCTATTGCACCGGTTTTGCACTGCTTGAGCACACTTCGAGCTTCTTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATTATTCACGAAAAAAATGGAACTTATATGAAGTAGACTCATTAGATGGAATCCATAATTTATCCGGGCAAAGATTTCAAGATTTTCAGAATGGTTCGGTTGTATCAGTGCCATCAAATGGTTTAAACAGTCATATTCAATACGAGGATCATGAAGGGCAAGAACAAACTCTTGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAAAAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATCGAATTCTGGATGGCAGTGTTGAAACAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGGATTTTAACTCATGCTGGAAACCTGAGACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGGACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAAGTAGAGGAGATGAAAAACTGTGGGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGCTTTCAAATCTTAAAGATGAGCTAGACAAAGTTAAAAGGGAACATGAAAATCATTGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTTTGAGGAGAAACTAAATGAACTTGAATACTTATTAGCTGATTCCAGGAAGAACGCGAAGGAACTTGAGACATTTTCTGAATCTAAATCACTGAGATGGAAAAAGAAAGAGTTCGTCTATCAAAATTTTGTTGATGATCTGCTTCGAGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACGTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTTGGATCGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATGCAGTTCTGAACGAAAATAGAAGATTGTATAATGAAGTTCAGGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAGTACATTGGTGAAAATGGTGAATTGGTGATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTAATTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCAGGAAAGACCTATACTATGAGTGGACCTGATGTATCATTGAGAGCAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAGCAAGTCCGTGATCTGCTCTCAACTAGCGTACCTGATGCCGGTATGCATCCTGTTAGATCTACTAGCGATGTCCTGGATTTGATGAAGATTGGATTGACAAACAGGGCAGTTGGAGCCACCGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTACGTGGTAGTCTTCATTTAATAGATCTTGCTGGTAGTGAAAGGGTGGACCGTTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACACATTAACAAATCATTGTCGGCACTTGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCGCACATACCTTACAGAAATAGCAAACTAACCCAAGTCCTCCAAAGTTCTTTAGGTGTCCTTCTCGTTTTTGTATTTGATTGGACCTTTATTATTCTATTTTCGGATAATTACTTAGTTCATCACTGTTTTGCTTTATTTGAACCTCTAGGTGGTCAAGCAAAGACGCTCATGTTTGTACAGATTAATCCCGATGTAGAGTCATACTCTGAAACAATTAGCACCCTGAAGTTTGCAGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGACGAGGAGATTGAGCGTTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGCTGGTTCCCTAAGATATGAGTCATTTTCTCCTAGAAGGTACTCTAGCACAACTCCTCGGCAGAGCCAAAAGCCATCAGGAAGAAAAGGCTTAGGGTTGGCGAATAAAGCAGCATCCGACATGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAGACATCATAAGCGTTCTGGATCTGGGTCACATCTGTTTATAGAAGACTTTAGACATAAGCGTTCTGGATCTGGATCACATCTGTCTGTAGAGGACTTTAAACATCAGAAGGAATCTTCTTCACAGTCAAGGGCTTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCTGACGAGAGATTAAGTGACATATCAGATGGTGGGCTTTCGATGGGAACTGAAACCGATGGATCAATTTGCAGTGTTGTGGAATATACTCTTTTCCCTGAAGTTCTAAAACCATCAGATGTTCCGTTTGCCGATACCAAATACCCGGAGAGCACATTGGATGTAAACAGGCCAGCAGAGACTGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAAAACTACTATAAATATGGCCCTTTATCATTTCTTAACCAATGTATCATTGAAGTCAGGCCCCAGGCCCCCACAAAAGCCCGTGCAAGCAAAACCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAACTCATTTGTAATGAATGCATATCTCAACATAAGCATAATTCAACAATCAAGGTATCTACTTACCTACTTGAAGTTCAAATTCTCACTTCGACATTTGTTTAACTTCACACTTCCAGTTTCTGGCTCATCCCATAGGTTGCCTTTTGCCATTCTAATTGGAATCTCATAA 3459 40.56 MAESKLKLELVEWLNFLLPDINLPLDASDEELRACLIDGTVLCSMLDKLCPGAVQGGNSKPIVPNIESFLITLDELALPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNYSRKKWNLYEVDSLDGIHNLSGQRFQDFQNGSVVSVPSNGLNSHIQYEDHEGQEQTLDVSGSNILELIKSKNLENVSTQSLFNMINRILDGSVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLRHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCGEQDKMALKEQKALCDVELSNLKDELDKVKREHENHCLQLETNAKEEKAKFEEKLNELEYLLADSRKNAKELETFSESKSLRWKKKEFVYQNFVDDLLRAFQELRISVESIKREVLNTKGNYAEDFNFLGSKFKGLADVAQNYHAVLNENRRLYNEVQGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSVPDAGMHPVRSTSDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHIPYRNSKLTQVLQSSLGVLLVFVFDWTFIILFSDNYLVHHCFALFEPLGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGAGSLRYESFSPRRYSSTTPRQSQKPSGRKGLGLANKAASDMDNFSDYDRRSEAGSLQSMDDFRHHKRSGSGSHLFIEDFRHKRSGSGSHLSVEDFKHQKESSSQSRALSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDVPFADTKYPESTLDVNRPAETATTGGKSLVPIPENYYKYGPLSFLNQCIIEVRPQAPTKARASKTVKSFIDEKLLKGSISINSFVMNAYLNISIIQQSRYLLTYLKFKFSLRHLFNFTLPVSGSSHRLPFAILIGIS 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2650124 2660305 + ClCG01G002680.2 Cla01g00260 263849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00260 1152 Gene3D Kinesin motor domain 452 841 IPR036961 -
Cla01g00260 1152 PANTHER KINESIN-4-LIKE ISOFORM X1 8 733 - -
Cla01g00260 1152 Coils Coil 391 411 - -
Cla01g00260 1152 Coils Coil 309 365 - -
Cla01g00260 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 837 IPR027417 -
Cla01g00260 1152 ProSitePatterns Kinesin motor domain signature. 667 678 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla01g00260 1152 SMART kinesin_4 455 807 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 SUPERFAMILY Calponin-homology domain, CH-domain 6 101 IPR036872 -
Cla01g00260 1152 MobiDBLite consensus disorder prediction 936 951 - -
Cla01g00260 1152 PRINTS Kinesin heavy chain signature 717 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 PRINTS Kinesin heavy chain signature 668 686 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 PRINTS Kinesin heavy chain signature 532 553 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 PRINTS Kinesin heavy chain signature 637 654 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 ProSiteProfiles Calponin homology (CH) domain profile. 4 106 IPR001715 GO:0005515
Cla01g00260 1152 ProSiteProfiles Kinesin motor domain profile. 457 799 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla01g00260 1152 MobiDBLite consensus disorder prediction 859 875 - -
Cla01g00260 1152 PANTHER KINESIN-4-LIKE ISOFORM X1 763 1032 - -
Cla01g00260 1152 MobiDBLite consensus disorder prediction 936 960 - -
Cla01g00260 1152 MobiDBLite consensus disorder prediction 850 898 - -
Cla01g00260 1152 PANTHER KINESIN-LIKE PROTEIN KLP-3 763 1032 - -
Cla01g00260 1152 Gene3D - 2 106 IPR036872 -
Cla01g00260 1152 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 733 - -
Cla01g00260 1152 Coils Coil 813 840 - -
Cla01g00260 1152 Pfam Kinesin motor domain 463 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00260 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 1800.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00260 Cla10g00365 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00260 Cla-Chr1:2650124 Cla10g01584 Cla-Chr10:31325126 1.33E-52 dispersed
Cla01g00260 Cla-Chr1:2650124 Cla03g00482 Cla-Chr3:5344976 3.51E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00260 Cla_Chr01 FPKM 29.640574 32.858093 24.390867 19.918224 37.008442 36.33382 35.986771 46.562229 47.111835 45.841923