Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00265 ATGGGTAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGATGAAGTACCAGCAACAAAGCAGCAATCCTCCAATTCAGACGACAACTTCCCAATTCGCAGGAAGAGGAAGAAGATGAAGCTTCAAGAGGAGGAGGAGGAGGAGGCGGAAGGGGATGAGAAGCATCGCAGGAGTAGAAAAAGTAGTAACAAGGGGGAGAAGGAGGTGGAAGCGTCCAAACAACGGCAGGCGGAAGATGAAGATGAGGATGATCAGTCCCAAGAGGATGCCAAGCCGATTGGGGATGTTGTTAGGGTTTCTGGAAAAGGAAGAGGAAGGAAGAATCATTACAATGCGTTTGAATATGATGGCAACAGATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATAAAGGTAACATGCTTAATTTCTTTTTCTTCAGGGTGTCAAAATTCTGAGGTTAATATTCATATTTTCGTGTATTGGTTCTTTGAGTTCGTGGAACTCGTTCTTATATGTCAGTTCTTGTTTTTATATGATATTACTCAGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGTGACCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTCATTGTGCGAAAAGTGTATGACACAGTTGAAAGAAAACTTTGGAAGCTAACTGATAAGGACTACGAAGATTCCAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCACGGTTGGGAGATCTCCCTGATATTGAGCCTGAAGATGCCCCAGCTGATCAAGAAGATCAGTTGAAAACTAAAAGGAGTTTCAAAAGGAAGAATATTTCTCCTCTTGATGTTACGAGAGATGAATCAGAAACAACCAGATCTGATCATGGCACAAAAGCTGAAACACCAGGAAGCTGTACTACAAATCGATCAGAGTACTACTCCATTTTAGAAATATTTGATGTTCTAACAGGTGAAACTCATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCATTCTCCTGAAAAAACACGTGAAAGTGATATAGGAAAAACTGCTGCTAATGGTGTCAACCTTGAAAATAAAAATCCAGAATTGTCAATTGCAGCAGAGAACAATGCTAAGAGTGGCAAGTCTTTTCTCTGGCCAGATGCAGCTGTTCCGGCAATAACTGCTCTTGAGAAGGTGTGCAATGATGCTCTATCTGCTGATTTTCAGAAATATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATACTCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCATCCAAAATCTTGAATATGTCACCCAATGAGCTCAAGAATTTGATTATCATAGGGAGTGTAGAAATGGATAGTAAAACAAGAAATCACTGTGACTTCCCTTTACTTAAGGACTTGGGAAAGGTCTCCATTTCCATTCTTGATTTTCAAAATGACTTTGAGTTACTCAAATCTCTGTCTCATAATAGGTGTAGGCTATTGTCGGTTGCTGTCATCATTTGGAATGGGATAGCGATGGCCACGTCCTCCAAATTCGAAATTGTATACAGACTAGGATGCCCTGTCCATTCTGTGGAAGGATTGACTGCTGAGGAGTCGGCAGCAACTAAAGAGCCTGATGAGTCTGAGCGTATGCAGATGACAGATGCTCGGTGTTCAAGGTGCACAGAATGTAAAGTGGGTGTCAGGGACATCATCCAAACAGGACATGGACAACGATATAAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAGTAGATGCGGCAACTAATTCTACCAAGAGTGTTGGAACCGCACCATGGGCAACTGCTAAATTTGAAGATGTAGAGAAGAGTCTACTCAGTCCTCGTGAATCCGAAAAAGCTGCCGAGGACCTCTTCAAGAAGACGAGTGAAGCGTACATTCCCGTAGTGGATAGTCAGAAATCTAACAAGATCAATCTCAGTGTACAGTTAGACAGAGTTAAGAGTAAAGGCTTCAAAATATTTAGCCCAAGTGAGATTCTTGTTGTTAATTGCTCAACTGTCCTGCTGAAAACGATTATATTTTTTTTATCTTTTCTAGATAAGTATTTGAATTTTTAG 2319 41.48 MGNRRFAQVSTSDEEDEVPATKQQSSNSDDNFPIRRKRKKMKLQEEEEEEAEGDEKHRRSRKSSNKGEKEVEASKQRQAEDEDEDDQSQEDAKPIGDVVRVSGKGRGRKNHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKVTCLISFSSGCQNSEVNIHIFVYWFFEFVELVLICQFLFLYDITQNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVERKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDAPADQEDQLKTKRSFKRKNISPLDVTRDESETTRSDHGTKAETPGSCTTNRSEYYSILEIFDVLTGETHRDRWLEKLLEGVQYICHSPEKTRESDIGKTAANGVNLENKNPELSIAAENNAKSGKSFLWPDAAVPAITALEKVCNDALSADFQKYNQKMRQLVFNLKNTRLLAQRLLNGELEPSKILNMSPNELKNLIIIGSVEMDSKTRNHCDFPLLKDLGKVSISILDFQNDFELLKSLSHNRCRLLSVAVIIWNGIAMATSSKFEIVYRLGCPVHSVEGLTAEESAATKEPDESERMQMTDARCSRCTECKVGVRDIIQTGHGQRYKLECIACGHSWYASRDELSMLTVDAATNSTKSVGTAPWATAKFEDVEKSLLSPRESEKAAEDLFKKTSEAYIPVVDSQKSNKINLSVQLDRVKSKGFKIFSPSEILVVNCSTVLLKTIIFFLSFLDKYLNF 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2713734 2720954 - ClCG01G002730.2 Cla01g00265 263854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00265 772 MobiDBLite consensus disorder prediction 1 104 - -
Cla01g00265 772 SUPERFAMILY Elongation factor TFIIS domain 2 444 507 IPR036575 GO:0006351
Cla01g00265 772 Pfam Transcription factor S-II (TFIIS), central domain 377 508 IPR003618 GO:0006351
Cla01g00265 772 Pfam BAH domain 122 277 IPR001025 GO:0003682
Cla01g00265 772 Gene3D - 375 508 IPR036575 GO:0006351
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 593 722 - -
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 145 - -
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 593 722 - -
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 145 - -
Cla01g00265 772 Gene3D - 85 297 IPR043151 -
Cla01g00265 772 SMART BAH_4 159 279 IPR001025 GO:0003682
Cla01g00265 772 SMART mid_6 401 512 IPR003618 GO:0006351
Cla01g00265 772 MobiDBLite consensus disorder prediction 31 82 - -
Cla01g00265 772 MobiDBLite consensus disorder prediction 304 360 - -
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 186 511 - -
Cla01g00265 772 MobiDBLite consensus disorder prediction 315 350 - -
Cla01g00265 772 CDD BAH_plant_3 102 288 - -
Cla01g00265 772 Coils Coil 34 54 - -
Cla01g00265 772 ProSiteProfiles TFIIS central domain profile. 381 508 IPR003618 GO:0006351
Cla01g00265 772 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 186 511 - -
Cla01g00265 772 ProSiteProfiles BAH domain profile. 159 279 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00265 - - - csv:101218620 836.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00265 Cla-Chr1:2713734 Cla10g01381 Cla-Chr10:28881557 5.35E-18 dispersed
Cla01g00265 Cla-Chr1:2713734 Cla06g01645 Cla-Chr6:29969371 4.23E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00265 Cla_Chr01 FPKM 0.034688 0.20753 11.453886 7.959461 40.836708 52.000996 43.370113 5.843479 3.157832 4.40385