Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00267 ATGAGAGAAATCCTCCATATTCAAGCAGGACAGTGTGGAAACCAAATTGGGGCTAAATTTTGGGAAGTTGTTTGTGATGAACATGGGATCGATCCCACCGGAAATTACACTGGAAGTAGTAACCTTCAACTCGAGAGAGTTAACGTTTACTACAACGAAGCGAGCGGTGGCCGATATGTTCCGAGGGCTGTTTTGGTTGACCTTGAACCAGGAACCATGGACAGCCTCAGGACAGGTCCTTATGGGAATATATTTAGGCCTGATAACTTTGTTTTTGGGCAAAATGGGGCTGGAAACAACTGGGCTAAAGGCCATTACACTGAAGGAGCTGAACTGGTTGATTCTGTTCTTGATGTGGTTCGCAAAGAAGCTGAGAATTGTGACTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACACTATTGATATCAAAGATCAGGGAAGAGTATCCTGACAGGATGATGTTAACTTTCTCTGTTTTCCCCTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTACAATGCCACTCTCTCTGTGCACCAGTTGGTTGAAAATGCTGATGAATGCATGGTTTTGGATAATGAAGCACTCTATGATATCTGCTTTAGGACCCTCAAGCTCACCAATCCAAGTTTTGGTGATCTCAACCACTTGATTTCAACAACCATGAGTGGAGTAACATGCTGCCTACGCTTCCCCGGCCAGCTCAACTCTGACCTCCGAAAGCTAGCTGTGAACCTCATCCCTTTCCCACGCCTCCACTTCTTCATGGTTGGTTTTGCACCCTTGACAGCTCGTGGTTCACAGCAGTACCGTGCACTCACCATCCCTGAGCTCACCCAGCAAATGTGGGATGCCAAAAACATGATGTGTGCTGCTGATCCTCGCCACGGTCGGTACCTAACTGCCTCAGCTTTGTTCCGTGGCAAGATGAGCACCAAGGAAGTCGACGAACAAATGATAAATGTACAGAACAAGAACTCATCCTATTTTGTTGAGTGGATTCCAAATAATGTTAAATCAAGTGTTTGTGACATCCCTCCAACTGGGTTGTCAATGTCTTCAACATTCATGGGAAACTCAACCTCAATACAAGAGATGTTTCGGCGAGTTTCTGAACAATTCACGGTCATGTTCAGGAGGAAGGCATTTTTGCATTGGTACACAGGGGAGGGAATGGATGAGATGGAGTTCACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAACAGTATCAAGATGCTGTGGCAGAGGATGAGGAGGAGGAGGAGGAGGATATGTTGGAGCACTAA 1332 45.95 MREILHIQAGQCGNQIGAKFWEVVCDEHGIDPTGNYTGSSNLQLERVNVYYNEASGGRYVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDAKNMMCAADPRHGRYLTASALFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEEEEEDMLEH 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2741029 2743826 + ClCG01G002750.1 Cla01g00267 263856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00267 443 Gene3D Tubulin/FtsZ, GTPase domain 1 262 IPR036525 -
Cla01g00267 443 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Cla01g00267 443 Pfam Tubulin C-terminal domain 261 382 IPR018316 -
Cla01g00267 443 PANTHER TUBULIN 1 437 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 Gene3D Helix hairpin bin 374 429 IPR023123 -
Cla01g00267 443 SMART Tubulin_C_4 246 383 IPR018316 -
Cla01g00267 443 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cla01g00267 443 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Cla01g00267 443 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 311 329 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 329 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 347 370 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 377 388 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Beta-tubulin signature 412 430 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla01g00267 443 Coils Coil 408 435 - -
Cla01g00267 443 Gene3D - 263 373 IPR037103 -
Cla01g00267 443 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PRINTS Tubulin signature 370 398 IPR000217 GO:0005874|GO:0007017
Cla01g00267 443 PANTHER TUBULIN BETA CHAIN 1 437 - -
Cla01g00267 443 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Cla01g00267 443 SUPERFAMILY Tubulin C-terminal domain-like 244 428 IPR008280 -
Cla01g00267 443 CDD beta_tubulin 2 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00267 K07375 TUBB; tubulin beta - csv:101219333 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00267 Cla-Chr1:2741029 Cla03g00774 Cla-Chr3:9425077 0 dispersed
Cla05g00126 Cla-Chr5:1201470 Cla01g00267 Cla-Chr1:2741029 1.61E-89 dispersed
Cla01g00267 Cla-Chr1:2741029 Cla10g02057 Cla-Chr10:36298518 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g325 Blo02g01109 . . Bda08g00518 Bpe05g00643 Bpe07g00111 . . . . Cma02g01455 . Car02g01221 . . . Cpe05g00332 . . . . . . . . . . . . . . . Cone7ag1495 Cone17ag1408 Cone20ag0075 . Csa05g00284 Chy09g01224 . . . . . . . Bma05g00818 . . Cmo02g01490 . . . . . . . Bhi12g00257 . . Lac11g2095 Hepe06g1547 . Lcy12g1654 Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 Lsi09g00262 . . Cme09g01760
Vvi16g686 Blo06g01126 Blo15g00166 . . . . Bma10g01224 Bma14g02083 . . . . . . . . . . . . . . . . Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 . . . . . . . . . Blo09g00113 . . . Bpe12g00435 Bma08g00325 . . . . . . . . . . Bhi12g00853 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00267 Cla_Chr01 FPKM 37.350777 42.924355 28.623396 28.132359 42.905785 42.569633 41.537651 32.962646 33.329235 33.019409