Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00273 ATGTTGAAGTTCCCGCGGCGAAAACGATCGCCGGCGGCAACAGAGGAGACTCCAAAAAATGCAACGGTTATTGACAACGAGGAGACCGCGGCGGCGAAGGCGGTGGTGTGTGTTAGCGGCATGAGTTGCTCTGCTTGCGCTGTGTCAGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCGGCCGTCGATTTCTTGAACGATAAGGCTCAAATCCTCTATCTCCCCAATCTCATCGACGTAGAGGCAATAATTAAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCAAACGATGGGACAAATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGGTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGCAATGTATGGAGTACAAAAGACTCACATTGCTTTGTTCAAAGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAATTGCAATCAGTTCATTGTAGCCATACAAGATATTGGATTTGAAGCCTTACCTATAACCATTGGTGAACACATTAACAAGATTGAGCTAAAGATTGATGGTATGCATAATGAAAACTCAACAACAAAAGTTAAAGAATCACTCGAATTGGTCCCGGGAATTGACGATATCAATATCGATACGACATTAAGCAAAGTTACCATCTCCTATAGGCCTGATATAACAGGACCTAGAACTTTCATTGACGTCCTCGAGTCGATCAAATCCGAGCATTTCAAGGTGACAATATATCCTGAAGAAAGAGGACGAGAAACTCGTAAGGAGAAAGAAATTAAGCAACATTATAAGTACCTTCTATGGAGCTCTGCTCTTTCTATACCTATTTTCTTAACTTCAATGGTATTCATGTATATACCTGGAATCAAGCAGACTTTAGATATCAAAGTTGTCAATATGATGAATGTTGGACATATAATCAGGTGGAATTTGTCGACTCCGGTGCAGTTCGTCATAGGTTCAAGATTCTACAACGGATCATACAAAGCATTGCGTCGCGGTTCTGCTAACATGGATGTATTGGTTACTTTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTGTTAAGAGCAGCTACATCTCCTACTTTCAGTGGTACAGATTTCTTTGAAACTAGTTCGATGTTGATTACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCTGAGGCCATTGCCAAGCTTAAACACTTGGCTCCCGAGACGGCCACACTCTTGACTTTAGATGGCCATGGAAATGTGATCGGTGAAATGGAAATCAGTAGTGAGTTGATTCAAAAGAATGATGTAATCAAGATTACGCCGGGTGCGAGAGTAGCTTCTGATGGTCTCGTAGTATGGGGCGAAAGTCATGTTAATGAGAGTATGATCACAGGAGAAGCGAAACCGGTAACAAAAAGGACCGGCGACAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACACATGTTGGATCAGAGAGTTCTTTAGCGCAAATCGTTCGACTTGTCGAATCATCCCAATTGGCAAAAGCTCCTATTCAGAAATTTGCAGATCATATCTCCAAGTATTTTGTGCCTCTGGTAATTATACTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTACATCTCTATCCTAAGTCATGGTTGCCTCCTTCAATGGACAGTTTTGAGCTTGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTTGCCACCCCGACCGCCGTGATGGTCGGTACCGGAGTTGGTGCATCTCAAGGTGTACTAATAAAAGGCGGTCAAGCATTAGAATTTGCTCATAAGGTGAGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTATAGACACAATAGTACTTGAAGAACTGCTTGAACTCACTGCTGCAACAGAGGTTAACAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAATTCAAGAAAGAACAGAACCCCATTTGGCCAGAAGTTCAAGAATTCATATCCATTCCTGGCCATGGAGTGGAAGCCATAGTAATGAACAAGAAAATAATGGTTGGAAACAAGAGCTTGATGATGAATAATGACATTGAAATCCCGGGGGAAGCAGAAAGCTTCCTTGTCGACGCCGAAGGTATGGCACAAACAGCGGTTTTGGTGGCCATAGGTCGAATGGTGTCGGGAGTTATCGCAGTGTCGGATCCATTGAAACCAGGTGCCAAAGAAGTTATTTCCATTCTCAAGTCTATGGAAGTGAAGAGCATCATGGTAACAGGTGACAATTGGGGTACTGCAAATTCCATTGCCAAAGAAGTTGGCATTGAAACAGTCATTGCAGAAGCCAAACCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACAGCGGGCCACACGGTGGCGATGGTCGGAGACGGGATCAATGACTCGCCTGCCCTAGTAGCAGCAGATGTCGGGATGGCAATTGGAGCCGGCATGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTTCCATTCATCTTTCAAGGAAAACCTTTGCTAGAATCCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCGATTGCGGCAGGCGTCCTGTTCCCTTCGACTCGGTTTCGGTTACCGCCGTGGATCGCTGGAGCCGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGTAGTTCTTTGATGTTGAAGAAATACAAGAGACCTAAGAAGCTTGATGAAGTTGAGATTCAAATGAATGGAATAGTGGTTGAATGA 2916 42.97 MLKFPRRKRSPAATEETPKNATVIDNEETAAAKAVVCVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDKAQILYLPNLIDVEAIIKAIENAGFQATISNDGTNHRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKTHIALFKEEAEVHYDPKVVNCNQFIVAIQDIGFEALPITIGEHINKIELKIDGMHNENSTTKVKESLELVPGIDDINIDTTLSKVTISYRPDITGPRTFIDVLESIKSEHFKVTIYPEERGRETRKEKEIKQHYKYLLWSSALSIPIFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFVIGSRFYNGSYKALRRGSANMDVLVTLGTNAAYFYSVYIVLRAATSPTFSGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVIGEMEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVTKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVIILSFLTWIAWFLAGKLHLYPKSWLPPSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVKLIDTIVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPIWPEVQEFISIPGHGVEAIVMNKKIMVGNKSLMMNNDIEIPGEAESFLVDAEGMAQTAVLVAIGRMVSGVIAVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGMDIAIEAADIVLMKNDLQDVITSIHLSRKTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEVEIQMNGIVVE 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2823528 2831925 - ClCG01G002820.2 Cla01g00273 263862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00273 971 Gene3D - 404 526 - -
Cla01g00273 971 CDD HMA 188 254 IPR006121 GO:0046872
Cla01g00273 971 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 389 922 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g00273 971 CDD HMA 114 175 IPR006121 GO:0046872
Cla01g00273 971 SUPERFAMILY Calcium ATPase, transduction domain A 436 522 IPR008250 -
Cla01g00273 971 SUPERFAMILY HMA, heavy metal-associated domain 33 102 IPR036163 GO:0046872
Cla01g00273 971 Pfam Heavy-metal-associated domain 36 95 IPR006121 GO:0046872
Cla01g00273 971 Pfam Heavy-metal-associated domain 189 246 IPR006121 GO:0046872
Cla01g00273 971 Pfam Heavy-metal-associated domain 114 174 IPR006121 GO:0046872
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 636 650 - -
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 765 776 - -
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 787 797 - -
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 840 859 - -
Cla01g00273 971 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
Cla01g00273 971 SFLD Haloacid Dehalogenase 618 892 - -
Cla01g00273 971 Gene3D - 109 177 - -
Cla01g00273 971 Gene3D - 721 771 IPR023299 GO:0000166
Cla01g00273 971 Gene3D - 643 720 IPR023299 GO:0000166
Cla01g00273 971 CDD P-type_ATPase_Cu-like 277 936 - -
Cla01g00273 971 Pfam haloacid dehalogenase-like hydrolase 633 854 - -
Cla01g00273 971 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 349 949 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cla01g00273 971 ProSiteProfiles Heavy-metal-associated domain profile. 111 177 IPR006121 GO:0046872
Cla01g00273 971 ProSiteProfiles Heavy-metal-associated domain profile. 33 99 IPR006121 GO:0046872
Cla01g00273 971 SUPERFAMILY HMA, heavy metal-associated domain 110 181 IPR036163 GO:0046872
Cla01g00273 971 SUPERFAMILY HMA, heavy metal-associated domain 181 247 IPR036163 GO:0046872
Cla01g00273 971 PRINTS Copper-transporting ATPase 1 signature 33 58 - -
Cla01g00273 971 PRINTS Copper-transporting ATPase 1 signature 59 82 - -
Cla01g00273 971 PRINTS Copper-transporting ATPase 1 signature 88 108 - -
Cla01g00273 971 PRINTS Copper-transporting ATPase 1 signature 134 155 - -
Cla01g00273 971 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 18 960 - -
Cla01g00273 971 Gene3D - 186 255 - -
Cla01g00273 971 Pfam E1-E2 ATPase 417 614 - -
Cla01g00273 971 Gene3D - 603 897 IPR023214 -
Cla01g00273 971 ProSitePatterns Heavy-metal-associated domain. 116 146 IPR017969 GO:0046872
Cla01g00273 971 PANTHER ATP7, ISOFORM B 18 960 - -
Cla01g00273 971 SUPERFAMILY Calcium ATPase, transmembrane domain M 381 918 IPR023298 -
Cla01g00273 971 CDD HMA 38 98 IPR006121 GO:0046872
Cla01g00273 971 SFLD p-type atpase 618 892 IPR044492 -
Cla01g00273 971 ProSitePatterns Heavy-metal-associated domain. 38 67 IPR017969 GO:0046872
Cla01g00273 971 Gene3D - 31 105 - -
Cla01g00273 971 ProSiteProfiles Heavy-metal-associated domain profile. 186 255 IPR006121 GO:0046872
Cla01g00273 971 ProSitePatterns E1-E2 ATPases phosphorylation site. 638 644 IPR018303 -
Cla01g00273 971 SUPERFAMILY HAD-like 635 946 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00273 Cla-Chr1:2823528 Cla04g00465 Cla-Chr4:17517724 0 dispersed
Cla01g00273 Cla-Chr1:2823528 Cla11g01161 Cla-Chr11:24336026 1.34E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00273 K17686 - csv:101220448 1742.63