Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00277 ATGGAATCATTTGCTTCTCTTGTGGTGCTTCCCTGTTTAATTTTGGGGGTTCTTTTTGGGGCTTGTGATTCTATTTCTTCCAATGAAGTCATGGCTCTAGGGGCTTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCAACCAGATCCTTGCTTATGGTCTGGCATTTCATGTTCTCCAACTGGAGACCATGTTTTAAAGATTAACATTTCACATTCTGCCTTAAAAGGGTTTCTTTCAGAAGATTTGGGTCAACTCAGTTTCTTGGAGGAACTAATTTTGCATGGAAATAAGCTGCATGGTCCAGTACCCAAGGAGTTGGGCTGCTTAAAGAACCTCAGAATCTTGGACTTGGGGATGAATCAATTCACAGGTCCAATTCCTCCAGAGTTTGGGAATTTAACCAAACTTGTTAAAATAAACCTCCAGTCTAATGAGTTCACTGGTCAGCTGCCTCCGGAGCTGGGAAATTTGAGATACCTTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAACTGTTGGCCATTCAGATCATACTGGACTGTATGTATCAAAAACGAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCTGACTTTTCGTATAACTTCTTTGTTGGGAGCATACCAAAGTGCTTGGAGCGTCTTCCAGGGTCAAGTTTCCAAGGGAATTGCCTCCATAAAAATAACTCCAAACAACGTCCTTTAGCACAATGCGCTATGACTAAGAGCCATCCAGGAAGCAACAGACCGAACCATCACCTCCGTCACCAAGTAACATCAAAACCAATCTGGCTTTTGACCCTTGAGATAGTAACCGGAACTCTGGTCGGTTCTCTCTTCCTTGTTGCTGTTCTCACTGCAGTCCAGAAGTTCAATCGAAAATCCTCCATGATATTGCCATGGAAGAAAGCTGGAAGCAGGAAGTATTACGCTCCAGTATATATAGATCCTGAGATATTAAAGGATGTAACGAGATTTAGTCGACAAGAACTTGAACTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTGTACAAGGGCATCATGAAAACTGGACCCGAGATTGCGGTTATCTCAATGAGCATGAAAGAAGAGCAATGGACAGGATACCTTGAACTCTATTTTCAGACAGAAGTAGCGGATTTATCACGAATCAACCACGAGAATACGGGAAAATTATTGGGTTATTGCAGAGAGAGTACTCCATTTACAAGGATGCTAGTTTTTGAGTATGCATCAAATGGAACATTATACGAGCATCTACATTATGGAGAAGCATGTCAGTTATCTTGGACGAGACGTATGAAGATTATTTTGGGCATCGCTCGAGGACTCAAGTATCTTCATACAGAACTCCAACCTCCATTCACCATATCTGAGCTGAATTCCAATTCTGTATATCTTACAGATGATTTCTTTCCAAAGCTGATAGATTTTGAAAGTTGGAAGACTATTCTTTCACGATCGGAGAAGAACTCGGGCTCTATAGGCAGCCAAGGTGCAATATGTGTTCTTCCGAACTCTCTAGAAGCACGACATCTCGACGTGCAGGGTAACATCTATGCATTCGGTGTCCTTTTACTAGAAATAATCAGTGGGAGGCCTCTGTACTGCAAAGACAAGGGAAACTTGGTAGATTGGGCCAAGGACTATATCGAAATGCCAGAAGTGATGTCTTATGTTGTCGACCCTGAACTGAAGCATTTTAGATATGAAGACCTTGAGGTAATATGTGAGGTGGCGAACCTTTGCATCCATCAGCAGCCGACCAAACTGCTATCGATGAAGGAACTCTGCACCATGTTAGAAACTAGAATTGATACCTCTGTTGCCATCGAGTTTAAGGCATCTTCTTTGGCATGGGCAGAGCTTGCACTCTCTTAG 1941 42.71 MESFASLVVLPCLILGVLFGACDSISSNEVMALGAFRSEVFEDPYQVFSNWNSLQPDPCLWSGISCSPTGDHVLKINISHSALKGFLSEDLGQLSFLEELILHGNKLHGPVPKELGCLKNLRILDLGMNQFTGPIPPEFGNLTKLVKINLQSNEFTGQLPPELGNLRYLEELRLDRNKLGGTVGHSDHTGLYVSKTNLTGFCGSSQLRVADFSYNFFVGSIPKCLERLPGSSFQGNCLHKNNSKQRPLAQCAMTKSHPGSNRPNHHLRHQVTSKPIWLLTLEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYAPVYIDPEILKDVTRFSRQELELACEDFSNIIGSSRDSLVYKGIMKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEACQLSWTRRMKIILGIARGLKYLHTELQPPFTISELNSNSVYLTDDFFPKLIDFESWKTILSRSEKNSGSIGSQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYVVDPELKHFRYEDLEVICEVANLCIHQQPTKLLSMKELCTMLETRIDTSVAIEFKASSLAWAELALS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2907211 2911668 - ClCG01G002870.1 Cla01g00277 263866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00277 646 Gene3D Ribonuclease Inhibitor 140 264 IPR032675 -
Cla01g00277 646 Gene3D Transferase(Phosphotransferase) domain 1 431 636 - -
Cla01g00277 646 Pfam Protein tyrosine and serine/threonine kinase 352 617 IPR001245 GO:0004672|GO:0006468
Cla01g00277 646 PANTHER PROTEIN MALE DISCOVERER 2 9 646 - -
Cla01g00277 646 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Cla01g00277 646 Gene3D Phosphorylase Kinase; domain 1 328 430 - -
Cla01g00277 646 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 646 - -
Cla01g00277 646 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cla01g00277 646 SUPERFAMILY L domain-like 28 229 - -
Cla01g00277 646 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g00277 646 SUPERFAMILY Protein kinase-like (PK-like) 328 622 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00277 - - - csv:101221772 1186.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00277 Cla07g00765 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00277 Cla-Chr1:2907211 Cla07g00765 Cla-Chr7:21437950 0 dispersed
Cla01g00277 Cla-Chr1:2907211 Cla02g01892 Cla-Chr2:34112772 1.23E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80231 PF07714 PK_Tyr_Ser-Thr 1.00E-17 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00277 Cla_Chr01 FPKM 7.837458 9.856141 11.994534 10.863468 9.361519 9.707774 8.80349 32.141476 28.734146 30.831871