Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00279 ATGGCCAAAGTGTACCCTCAAACAGCGCCGTCGCCGTCGTCATCTCCGTCGTCTTCATCGCTCTGTTCCGAAACCGAAATCGAAACCTTCACCATTTGGATGAAATCTCTGATTTACCACACAAATGGCTGCACCGTCTTCGATTCCAATGGCGACATCGTCTACAGAGTCGATAACTACGACAGAAAATGCAGTCGCGAAGTATTTCTCATGGATCTCAGAGGCAAAGTTCTCTTCACCATCAGGAAAAAGAAATTCTCGATTCTTGGAGGATGGGAAGGATACCGATGGATCGAATCGGAGAGAAGTAAGAAGCCTAGTTTTGGAGTGAAGAAATTGTACAGATCAGGATCGAGGAAGAGAAATCAATCGGTATGTGAAATAAATGTGGGATTTGAGAGATTTTCATTGGTGAAAATGGATGGGAAACTGGCTTTCAGAATAATCAACATCAATGGAGAAGTAGTTGCAGAGGCGAAGAGAAAAGTTTCATGGAACGGGATTTTGTTGGGAGATGATGTGTTGAGTTTAAATGCAAATTCTCAGATTGAAAGATCTTTAATTATGGCTTTGGTCACTGTTTATGGCTTAATCCGTCGCCAAATGTAA 609 42.36 MAKVYPQTAPSPSSSPSSSSLCSETEIETFTIWMKSLIYHTNGCTVFDSNGDIVYRVDNYDRKCSREVFLMDLRGKVLFTIRKKKFSILGGWEGYRWIESERSKKPSFGVKKLYRSGSRKRNQSVCEINVGFERFSLVKMDGKLAFRIININGEVVAEAKRKVSWNGILLGDDVLSLNANSQIERSLIMALVTVYGLIRRQM 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2940675 2941735 + ClCG01G002890.1 Cla01g00279 263868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00279 202 SUPERFAMILY Tubby C-terminal domain-like 23 198 IPR025659 -
Cla01g00279 202 MobiDBLite consensus disorder prediction 7 21 - -
Cla01g00279 202 MobiDBLite consensus disorder prediction 1 21 - -
Cla01g00279 202 PANTHER PROTEIN LURP-ONE-RELATED 4 2 201 - -
Cla01g00279 202 Gene3D - 18 202 IPR038595 -
Cla01g00279 202 PANTHER - 2 201 IPR007612 -
Cla01g00279 202 Pfam LURP-one-related 19 194 IPR007612 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00279 - - - csv:101222243 367.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00279 Cla-Chr1:2940675 Cla10g02158 Cla-Chr10:37179265 9.29E-24 dispersed
Cla01g00279 Cla-Chr1:2940675 Cla01g00280 Cla-Chr1:2953647 4.25E-42 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g343 . Blo03g00204 . . . . . Bma14g00616 . . Cma02g01467 Cma15g01217 . Car15g01097 . . Cpe05g00320 . . . . . . . . . . . . . . . . . . . . Chy09g01208 . . . Bda07g00476 . . Bpe11g00653 . . . Cmo02g01504 Cmo15g01282 . . . . . . Bhi12g00231 . . . . . . Cla01g00279 Cam01g0289 Cec01g0282 Cco01g0295 Clacu01g0288 Cmu01g0275 Cre09g2232 Lsi09g00277 . . Cme09g01745
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004305 2 2 0 3 3 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00279 Cla_Chr01 FPKM 3.263573 3.39377 8.086457 6.205558 0.546032 0.0 0.223892 0.86232 1.03457 1.213349