Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00284 ATGGATGGTCGCGCTCTAACGGCCTCTTCCTTCTTCACTCCCATTGATTTATTGCGACCCAGAAGAGGAGCTGTTAGAAATCTGTGTTTTAATGGCAGACCCAGTAAGTTTTCTGTTCTTGCTTCCAAAGAAGAGGCTGAACTCGACCGTTGGGACCAAATGGAGCTCAAGTTCGGCCGCTTGATTGGGGAAGACCCCAAATTAACATTGGCCAAGATAATGAGCAAAAAAATGAATCCAGATGCTTCTTATCTTGAAGTTGAGAAATCATTTTACCAGAAGAAGGGAAAGTCTAACGAGGTAGAGGAACTTTCTCTTGATGGGTTGAATTTGGTCAGACCTCAGCTAAAGAAGGAAATGAAGTTAAAGGCTGCCAATAAGCCACCTGCACCAGATTTAAAGAAACCAAGCCAAGCAGTTGGAAAGGTAGCAGTTAGTCCTAAAGGTAGGGTTCCCAATGTTATTTTGAGAAAACCGACGATTTATAATGAGGACGATGTTGAAGATAAGCCGTCACGGATAAGGATGAAGCCAAATTTATCATTGAAAATGAGCAATGTATCAACAAAGGAGCAATATAGTGATATGACACTGTTGAGGAAGCCAGAACCAATGACTTCAAATGAAATTATTGATGAGAAGGAAAAGCTCTCTGGTGATGGGTATGTCGATGTTGTTGAAAATCGGGCTACCAAGGGATCAACAAGTGACCGAGTTGATGATTTTACTCTTTCTAAGAAGCCAGAAATAGGAGGTGACCAAACAAGACTTGAAAATGAAAATGATCATAAAAATCTGGCTTATTCAGAAAGTGATACGGTTGATGGTAAAGAGGAGAATGACATTGAAGACTTACATGTCCTAAAAAAGCCTTTAAATATGATGTCTAGCATGTCTGAAGAAACTGGAGTAGGCTCGTCAACAAATGAAAACAGGAAAGATATTGATTATTCTCCTATAGGATTACAGCTACATGAGCCAAGTGATGTAGATTATGGTGAGGACCCAGCAGCTTTGAGCGAATCATTCAGTGATATTTTGGATTCAACAATAGAGGTGTCCAAAAAAGCTACATTATTGGGTAAACCAAGAAGAGTTGATCATTCTTCCAAGGAAGCACTAAAACTCCGTAGAGAAGAGGCCTCCACCCCTGAAACAGACGTCAATGGTGCCGTTGAGACAGAGACCTTCTCTGCTATCCCTGCTTTGGAGGAACACGAACTTGCTGACTGGACTAAAGCAGAGGATCTGGCTAAGTCAGGAGACAGAGCTGACGTGGAGATAATAAGCTCGAGTACTCGAGGTTTTGTTGTATCATTTGGCTCCCTAGTAGGATTTATTCCATATCGTAATCTTGCTGCCAAGTGGAAGTTCTTGGCTTTTGAGTCATGGCTAAGACAGAAAGGTTTGGATCCATCAATATACAAGCAAAACTTAGGAACTATTGGAAGTAGTGATGGTGGAAGCCAGGCCTTTGCCAGTACTAGGCCGAATCTGGAAATTGATGTAAAAGATGGGGGAGAACTTACACCTGATATGAAATTGGAGGATCTTCTTCAAATTTATGATCGAGAGAAAATCAAATTCTTGTCATCATTTGTTGGCCAGAAAATCAAAGTAAATGTGGTGTTGGCAAACAGAAAATCAAGGAAGCTTATATTTTCCGTAAGGCCAAAAGAGAGGGAGGAATTGGTCGAGAAAAAGAGGAGTTTAATGGCGACGCTGCAAGTAGGTGATGTTGTCAAATGCTGCATTAAGAAGATTGCTTATTTTGGTATCTTTGTTGAGATCGAAGGAGTGCCTGCTTTGATTCATCAGACAGAGGTTTCCTGGGACGCTACTTTAAACCCTGCATCATATTTTAAAATTGGTCAGGTTGTAGAGGCCAAAGTTCATCAGTTGGATTTTTCACTCGAACGCATATTCTTATCATTGAAGCAGATTACACCAGACCCGCTAGCGGAAGCATTGGAGTCTGTGGTTGGTGATCATGATCCCATGGATGGAAGATTAGATTCAGCCGAAGTAGATACCGAGTGGGCTGATGTAGAATCTCTCATCAAGGAACTGGAAAATACTGAAGGTATTGAGTCTGTATCCAAAGAGCGTTTTTTCCTTAGCCCTGGATTGGCTCCAACCTTTCAGGTATATATGGCTTCCATGTATGAAAATCAGTACAAATTACTTGCTCGATCTGGAAACAAAGTACAAGAGCTGATGGTTGAGACATCATTGGATAAAGAAACAATGAAATCTGTTATCTTAACTTGCACCAACAGGTTTCTGGCTATTCTTGTCATAATATTTGGGATATGGATGGGCACACACCACGATGGTTGTCGAAAATCTCTCACTCTTCCTGTTATGGGACTTGTATCTGATCATGCTGTGCATTACATTGGTGGGGATCCTCGTGTTTACGGTGCTAGCCTTAATAATTCTGATAATTGGATGCGTCTGAAAAGCTGTCTTGTCAAATCTGAGGATTGCAATAATCTTTCTAAAAGATACAAGACTCTCAAGCAGTACAAATTGGCAAAGCTGACGCCAATGGAAGCGGGTTGTTGCAGACCCCCATCAGAATGTGGTTATCCTGCTGTTAATGCATCATACTATGACTTGAGCTTTCATCCTGTCAATTCAAACCATGATTGCAAACTATACAAGAATTCCAAGGCAGTCAAGTGTTACGATTGTGATTCGTGCAAGGCCGGAGTCGCACAGTACATGAAAACTGAATGGCGATTGGTTGCAATCTTCAATGTCATTCTATTTGTTGTCTTGTCGGATGCTGCGCTAGACGAAAAGCTGCAAAAAATCGGTCTAAAGGCTAGCGGCATAGCAGTTGTGCTCAACAGACTGATTAAACACTGA 2874 41.37 MDGRALTASSFFTPIDLLRPRRGAVRNLCFNGRPSKFSVLASKEEAELDRWDQMELKFGRLIGEDPKLTLAKIMSKKMNPDASYLEVEKSFYQKKGKSNEVEELSLDGLNLVRPQLKKEMKLKAANKPPAPDLKKPSQAVGKVAVSPKGRVPNVILRKPTIYNEDDVEDKPSRIRMKPNLSLKMSNVSTKEQYSDMTLLRKPEPMTSNEIIDEKEKLSGDGYVDVVENRATKGSTSDRVDDFTLSKKPEIGGDQTRLENENDHKNLAYSESDTVDGKEENDIEDLHVLKKPLNMMSSMSEETGVGSSTNENRKDIDYSPIGLQLHEPSDVDYGEDPAALSESFSDILDSTIEVSKKATLLGKPRRVDHSSKEALKLRREEASTPETDVNGAVETETFSAIPALEEHELADWTKAEDLAKSGDRADVEIISSSTRGFVVSFGSLVGFIPYRNLAAKWKFLAFESWLRQKGLDPSIYKQNLGTIGSSDGGSQAFASTRPNLEIDVKDGGELTPDMKLEDLLQIYDREKIKFLSSFVGQKIKVNVVLANRKSRKLIFSVRPKEREELVEKKRSLMATLQVGDVVKCCIKKIAYFGIFVEIEGVPALIHQTEVSWDATLNPASYFKIGQVVEAKVHQLDFSLERIFLSLKQITPDPLAEALESVVGDHDPMDGRLDSAEVDTEWADVESLIKELENTEGIESVSKERFFLSPGLAPTFQVYMASMYENQYKLLARSGNKVQELMVETSLDKETMKSVILTCTNRFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLVSDHAVHYIGGDPRVYGASLNNSDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQYMKTEWRLVAIFNVILFVVLSDAALDEKLQKIGLKASGIAVVLNRLIKH 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2995230 3009395 - ClCG01G002940.1 Cla01g00284 263873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00284 957 MobiDBLite consensus disorder prediction 234 257 - -
Cla01g00284 957 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 760 - -
Cla01g00284 957 SMART S1_6 576 646 IPR022967 -
Cla01g00284 957 SMART S1_6 419 557 IPR022967 -
Cla01g00284 957 SUPERFAMILY Nucleic acid-binding proteins 563 669 IPR012340 -
Cla01g00284 957 Pfam S1 RNA binding domain 575 646 IPR003029 GO:0003676
Cla01g00284 957 Gene3D - 559 649 IPR012340 -
Cla01g00284 957 ProSiteProfiles S1 domain profile. 578 646 IPR003029 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00284 - - - csv:101217667 1339.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00284 Cla-Chr1:2995230 Cla06g01275 Cla-Chr6:26019659 3.57E-22 dispersed
Cla07g01473 Cla-Chr7:32013709 Cla01g00284 Cla-Chr1:2995230 2.62E-14 dispersed
Cla01g00284 Cla-Chr1:2995230 Cla11g00165 Cla-Chr11:1959612 2.04E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g360 . . . . . . . Bma14g00589 . . Cma02g01473 Cma15g01214 Car02g01234 . . . Cpe05g00316 . . . . . . . . . . . . . . Cone8ag0319 . . . . . Chy09g01203 . Blo03g00366 . . . . Bpe11g00678 . . . Cmo02g01508 Cmo15g01278 . . . . . Cpe13g00166 Bhi12g00222 . . Lac11g2117 Hepe06g1566 . Lcy12g1674 Cla01g00284 Cam01g0295 Cec01g0288 Cco01g0301 Clacu01g0295 Cmu01g0281 Cre09g2228 Lsi09g00284 . . Cme09g01740
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00284 Cla_Chr01 FPKM 0.960366 1.145611 0.703812 0.85566 0.358136 0.236617 0.306243 0.520643 0.564947 0.372952