Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00291 ATGAAAAGATCAAAAGCACATCTAATACCTTTCATCATATTTCCTCAAATGGGTATCTCTAATGTTTGTTTTGTCTTCTTTATTTCTCTTATTTCTTTCTATTCCCACACCCATGCAGCTACTTTTCAAGTCCGCAACAACTGCCCCTTCACTGTTTGGGCTGCCGCTGTACCCGGCGGCGGACGGCAACTTAATCGGAACGATGTTTGGACGTTCAACGTGAGTCCCGGCACCGCTGCCGCTCGTATTTGGGCACGAACTAACTGCAACTTCGACGGTTCCGGCCGTGGTAGATGCCAGACTGGTGACTGTGGTGGCCTCCTCCAGTGCCAAGCCTACGGTACTCCGCCGAACACCCTCGCCGAATATGCGTTGAACCAATTCAATAACTTGGACTTCTTCGATATCTCTCTCGTCGATGGGTTTAACGTTCCGATGGAGTTCAGCCCCACTTCTGGCGGGTGCACTCGTGGCATCAGGTGCACTGCGGACATCAACGGACAATGCCCCAACGAGCTTAGGGCTCCTGGAGGATGCAACAACCCGTGCACCGTGTTCGGCGGCGATCAATACTGCTGCACCGCCCCCAACAGCAGCTGCGGGCCCACGTTTTACTCTAGGTTCTTCAAGGATCGGTGCCCAGATGCATACAGTTACCCCAAAGATGATGCAACCAGCACATTCACTTGTCCTGGGGGAACCAACTATAGAGTCGTCTTCTGCCCTTAA 729 52.26 MKRSKAHLIPFIIFPQMGISNVCFVFFISLISFYSHTHAATFQVRNNCPFTVWAAAVPGGGRQLNRNDVWTFNVSPGTAAARIWARTNCNFDGSGRGRCQTGDCGGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISLVDGFNVPMEFSPTSGGCTRGIRCTADINGQCPNELRAPGGCNNPCTVFGGDQYCCTAPNSSCGPTFYSRFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3060780 3061689 - ClCG01G003020.2 Cla01g00291 263880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00291 242 SUPERFAMILY Osmotin, thaumatin-like protein 39 242 IPR037176 -
Cla01g00291 242 SMART tha2 42 242 IPR001938 -
Cla01g00291 242 ProSitePatterns Thaumatin family signature. 95 110 IPR017949 -
Cla01g00291 242 PANTHER THAUMATIN-LIKE PROTEIN 23 242 - -
Cla01g00291 242 Pfam Thaumatin family 46 242 IPR001938 -
Cla01g00291 242 CDD TLP-P 42 242 - -
Cla01g00291 242 Gene3D Thaumatin 39 242 IPR037176 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 60 69 IPR001938 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 41 53 IPR001938 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Cla01g00291 242 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Cla01g00291 242 PANTHER OS03G0233200 PROTEIN 23 242 IPR001938 -
Cla01g00291 242 PIRSF PR5 4 242 IPR001938 -
Cla01g00291 242 ProSiteProfiles Thaumatin family profile. 39 242 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00291 - - - csv:101202921 457.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00291 Cla-Chr1:3060780 Cla10g00327 Cla-Chr10:4236919 5.19E-100 dispersed
Cla01g00289 Cla-Chr1:3052068 Cla01g00291 Cla-Chr1:3060780 1.73E-09 proximal
Cla01g00290 Cla-Chr1:3056023 Cla01g00291 Cla-Chr1:3060780 6.28E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00291 Cla_Chr01 FPKM 14.779975 15.173201 22.340984 22.173645 20.445395 19.03764 20.305454 33.06591 33.249325 38.141521