Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00293 ATGAAGAAAGAAGTGGCGGAGGTCATTCTCAGGCGCCGCGCTCTTCTTTACTCCTCCGATTCCGATTCCAGATTCTCCCTCAGATTGAGACGAGAGTTGTTGAAAATCGGAGATCCTTGCGGTTCAGATCTGGGAGAAGAGGCGATGGCGCCGTCGCCGGCGGAACCGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCGTTTCTAACGAAAACTTATCAATTGGTTGATGATCCGGCTGTGGACGATCTCATCTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTCAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGGTTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCCGGAGAGGTGAGAAAGGACTTCTCCGAGACATTCAGCGGCGTAAAGTGGCGCTGTCGGTAACAACAACGACGCCGGCTACTCCAGCTGCGGTGGCTGTGCCAGTGACGGTGGCGGCGTCTCCAGCAGTGTTGGCTCACGTTATATCACCGGCGAACTCTGCAGAAGAGCAAGTTACGTCCTCGAACTCATCGCCCATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTGAGTCACGAGTTGACCCAGTTGAAAGGACTCTGTAACAGCATACTATCGCTGATGACGAATTACGCATCAGATCACCATCACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTAGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACGATGACAGCGGCAGCGGCGGCGGCAGGAATGACGCCGAAACTGTTCGGGGTATCGATCGGGGTGAAGCGGATGAGGAGAGAGGAAGAAGACGAGGAAGAGATGGTTGGGCAGAATCATGTACAGTCGGAAGAAGGGGAGACGGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCATGGCTTGAACTCGGAAATCAAGGCTCCTGA 1170 53.16 MKKEVAEVILRRRALLYSSDSDSRFSLRLRRELLKIGDPCGSDLGEEAMAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTTPATPAAVAVPVTVAASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNSILSLMTNYASDHHHQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAAGMTPKLFGVSIGVKRMRREEEDEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3074578 3077457 + ClCG01G003040.1 Cla01g00293 263882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00293 389 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla01g00293 389 MobiDBLite consensus disorder prediction 372 389 - -
Cla01g00293 389 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla01g00293 389 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla01g00293 389 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla01g00293 389 MobiDBLite consensus disorder prediction 44 68 - -
Cla01g00293 389 Gene3D - 65 163 IPR036388 -
Cla01g00293 389 MobiDBLite consensus disorder prediction 203 224 - -
Cla01g00293 389 Coils Coil 232 252 - -
Cla01g00293 389 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla01g00293 389 MobiDBLite consensus disorder prediction 336 370 - -
Cla01g00293 389 SUPERFAMILY Winged helix DNA-binding domain 70 162 IPR036390 -
Cla01g00293 389 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 59 376 - -
Cla01g00293 389 MobiDBLite consensus disorder prediction 336 389 - -
Cla01g00293 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 376 IPR027725 -
Cla01g00293 389 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00293 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101203886 593.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00293 Cla-Chr1:3074578 Cla05g02052 Cla-Chr5:32219334 1.73E-62 dispersed
Cla01g01646 Cla-Chr1:31304034 Cla01g00293 Cla-Chr1:3074578 7.51E-63 transposed
Cla10g01503 Cla-Chr10:30261444 Cla01g00293 Cla-Chr1:3074578 3.52E-52 transposed
Cla01g00293 Cla-Chr1:3074578 Cla05g00865 Cla-Chr5:8574780 1.55E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00509 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cla09g00684 . 85 326 HSF AT4G17750 51.0 1.9e-59 227.3
Cla08g01675 . 42 242 HSF AT4G17750 54.6 6.2e-58 222.2
Cla01g00293 . 41 163 HSF AT4G17750 61.8 3.8e-39 159.8
Cla08g01578 CCT 14 118 HSF AT4G17750 69.5 3.8e-39 159.8
Cla05g02052 CCT 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cla05g00509 . 38 242 HSF AT5G16820 57.0 4.9e-60 229.2
Cla07g00047 . 78 299 HSF AT5G16820 51.7 3.2e-59 226.5
Cla09g00684 . 86 298 HSF AT5G16820 54.0 5.6e-56 215.7
Cla08g01675 . 43 253 HSF AT5G16820 51.1 4.8e-55 212.6
Cla01g02342 CCT,ECH 9 191 HSF AT5G16820 50.3 5.5e-43 172.6
Cla06g00845 CCT 10 176 HSF AT5G16820 51.6 6.0e-42 169.1
Cla02g01784 . 82 257 HSF AT5G16820 50.3 3.0e-41 166.8
Cla10g00139 . 24 538 HSF AT1G32330 51.6 9.8e-117 417.5
Cla05g00509 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cla09g00684 . 74 294 HSF AT1G32330 51.8 1.0e-57 221.5
Cla07g00047 . 64 263 HSF AT1G32330 53.1 3.9e-57 219.5
Cla08g01675 . 31 223 HSF AT1G32330 54.1 1.1e-54 211.5
Cla08g01578 CCT 20 117 HSF AT1G32330 72.4 3.1e-38 156.8
Cla07g00047 . 78 299 HSF AT3G02990 52.6 3.0e-62 236.5
Cla05g00509 . 38 241 HSF AT3G02990 57.6 2.5e-61 233.4
Cla09g00684 . 86 309 HSF AT3G02990 52.4 2.0e-58 223.8
Cla08g01675 . 43 242 HSF AT3G02990 51.7 6.1e-55 212.2
Cla06g00845 CCT 10 172 HSF AT3G02990 50.3 3.8e-41 166.4
Cla05g00509 . 25 287 HSF AT2G26150 52.3 3.5e-68 255.8
Cla09g00684 . 74 293 HSF AT2G26150 54.3 5.3e-64 241.9
Cla10g00139 . 29 266 HSF AT2G26150 53.1 1.1e-56 217.6
Cla11g00154 . 28 247 HSF AT2G26150 51.1 9.3e-53 204.5
Cla03g00695 CCT,ECH 5 156 HSF AT2G26150 52.0 4.1e-40 162.5
Cla02g01784 . 71 258 HSF AT4G18880 52.7 2.7e-51 199.9
Cla02g01784 . 73 252 HSF AT4G13980 50.6 1.4e-43 174.5
Cla05g00509 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cla08g01675 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cla09g00684 . 74 411 HSF AT3G22830 51.6 6.2e-88 321.6
Cla07g00047 . 53 387 HSF AT3G22830 50.9 6.8e-87 318.2
Cla08g01675 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cla10g00139 . 12 265 HSF AT3G22830 50.8 2.1e-59 226.9
Cla09g00684 . 73 387 HSF AT3G51910 50.9 2.1e-71 266.2
Cla07g00047 . 63 359 HSF AT3G51910 52.5 8.6e-70 260.8
Cla08g01675 . 31 223 HSF AT3G51910 56.0 5.1e-54 208.4
Cla07g00047 . 64 358 HSF AT3G63350 50.3 4.6e-66 248.4
Cla08g01675 . 31 230 HSF AT3G63350 52.5 3.5e-50 195.7
Cla02g01784 . 74 209 HSF AT3G63350 56.6 3.1e-38 156.0
Cla11g00154 . 32 248 HSF AT5G54070 51.4 2.6e-52 203.0
Cla01g01646 . 46 337 HSF AT4G36990 51.8 2.4e-70 262.7
Cla08g01578 CCT 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cla01g00293 . 64 385 HSF AT4G11660 51.9 8.3e-79 291.2
Cla08g01578 CCT 16 121 HSF AT4G11660 71.7 3.9e-44 176.0
Cla01g01646 . 46 148 HSF AT4G11660 72.8 1.8e-41 167.2
Cla03g01198 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cla10g01503 CCT 14 222 HSF AT2G41690 53.6 9.5e-52 200.7
Cla04g00354 CCT 7 214 HSF AT2G41690 51.0 2.6e-49 192.6
Cla08g01578 CCT 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cla05g02052 CCT 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cla03g01198 . 19 200 HSF AT1G46264 51.9 3.0e-51 199.5
Cla10g00139 . 33 161 HSF AT1G46264 60.5 3.2e-37 152.9
Cla02g01784 . 74 184 HSF AT1G46264 63.1 4.2e-37 152.5
Cla10g01503 CCT 21 118 HSF AT1G46264 68.4 7.2e-37 151.8
Cla05g00509 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cla09g00684 . 85 326 HSF AT4G17750 51.0 1.9e-59 227.3
Cla08g01675 . 42 242 HSF AT4G17750 54.6 6.2e-58 222.2
Cla01g00293 . 41 163 HSF AT4G17750 61.8 3.8e-39 159.8
Cla08g01578 CCT 14 118 HSF AT4G17750 69.5 3.8e-39 159.8
Cla05g02052 CCT 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cla05g00509 . 38 242 HSF AT5G16820 57.0 4.9e-60 229.2
Cla07g00047 . 78 299 HSF AT5G16820 51.7 3.2e-59 226.5
Cla09g00684 . 86 298 HSF AT5G16820 54.0 5.6e-56 215.7
Cla08g01675 . 43 253 HSF AT5G16820 51.1 4.8e-55 212.6
Cla01g02342 CCT,ECH 9 191 HSF AT5G16820 50.3 5.5e-43 172.6
Cla06g00845 CCT 10 176 HSF AT5G16820 51.6 6.0e-42 169.1
Cla02g01784 . 82 257 HSF AT5G16820 50.3 3.0e-41 166.8
Cla10g00139 . 24 538 HSF AT1G32330 51.6 9.8e-117 417.5
Cla05g00509 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cla09g00684 . 74 294 HSF AT1G32330 51.8 1.0e-57 221.5
Cla07g00047 . 64 263 HSF AT1G32330 53.1 3.9e-57 219.5
Cla08g01675 . 31 223 HSF AT1G32330 54.1 1.1e-54 211.5
Cla08g01578 CCT 20 117 HSF AT1G32330 72.4 3.1e-38 156.8
Cla07g00047 . 78 299 HSF AT3G02990 52.6 3.0e-62 236.5
Cla05g00509 . 38 241 HSF AT3G02990 57.6 2.5e-61 233.4
Cla09g00684 . 86 309 HSF AT3G02990 52.4 2.0e-58 223.8
Cla08g01675 . 43 242 HSF AT3G02990 51.7 6.1e-55 212.2
Cla06g00845 CCT 10 172 HSF AT3G02990 50.3 3.8e-41 166.4
Cla05g00509 . 25 287 HSF AT2G26150 52.3 3.5e-68 255.8
Cla09g00684 . 74 293 HSF AT2G26150 54.3 5.3e-64 241.9
Cla10g00139 . 29 266 HSF AT2G26150 53.1 1.1e-56 217.6
Cla11g00154 . 28 247 HSF AT2G26150 51.1 9.3e-53 204.5
Cla03g00695 CCT,ECH 5 156 HSF AT2G26150 52.0 4.1e-40 162.5
Cla02g01784 . 71 258 HSF AT4G18880 52.7 2.7e-51 199.9
Cla02g01784 . 73 252 HSF AT4G13980 50.6 1.4e-43 174.5
Cla05g00509 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cla08g01675 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cla09g00684 . 74 411 HSF AT3G22830 51.6 6.2e-88 321.6
Cla07g00047 . 53 387 HSF AT3G22830 50.9 6.8e-87 318.2
Cla08g01675 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cla10g00139 . 12 265 HSF AT3G22830 50.8 2.1e-59 226.9
Cla09g00684 . 73 387 HSF AT3G51910 50.9 2.1e-71 266.2
Cla07g00047 . 63 359 HSF AT3G51910 52.5 8.6e-70 260.8
Cla08g01675 . 31 223 HSF AT3G51910 56.0 5.1e-54 208.4
Cla07g00047 . 64 358 HSF AT3G63350 50.3 4.6e-66 248.4
Cla08g01675 . 31 230 HSF AT3G63350 52.5 3.5e-50 195.7
Cla02g01784 . 74 209 HSF AT3G63350 56.6 3.1e-38 156.0
Cla11g00154 . 32 248 HSF AT5G54070 51.4 2.6e-52 203.0
Cla01g01646 . 46 337 HSF AT4G36990 51.8 2.4e-70 262.7
Cla08g01578 CCT 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cla01g00293 . 64 385 HSF AT4G11660 51.9 8.3e-79 291.2
Cla08g01578 CCT 16 121 HSF AT4G11660 71.7 3.9e-44 176.0
Cla01g01646 . 46 148 HSF AT4G11660 72.8 1.8e-41 167.2
Cla03g01198 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cla10g01503 CCT 14 222 HSF AT2G41690 53.6 9.5e-52 200.7
Cla04g00354 CCT 7 214 HSF AT2G41690 51.0 2.6e-49 192.6
Cla08g01578 CCT 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cla05g02052 CCT 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cla03g01198 . 19 200 HSF AT1G46264 51.9 3.0e-51 199.5
Cla10g00139 . 33 161 HSF AT1G46264 60.5 3.2e-37 152.9
Cla02g01784 . 74 184 HSF AT1G46264 63.1 4.2e-37 152.5
Cla10g01503 CCT 21 118 HSF AT1G46264 68.4 7.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60347 PF00447 HSF_DNA-bind 4.10E-32 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00293 Cla_Chr01 FPKM 9.051605 9.081297 4.275949 3.173556 1.997687 1.742339 2.294543 1.931084 2.178825 1.753134